RetrogeneDB ID:
retro_ecab_940
Organism:
Horse ( Equus_caballus )
Location:
7:85423425-85423722 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
76.77 %
Coverage:
70.71 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
PDZD11
Parental gene aliases:
No gene alias available
Parental gene description:
PDZ domain containing 11 [Source:HGNC Symbol;Acc:28034]

Genomic region (view in browser)





>retro_ecab_940
AGGGTATACCGTGCATGCTGCAACAATGAGTTGAGCCATTTTCTGCCCCGAATCATCACA
CTGAAGAAGCCCCCTGGAGCTCAGTGGGGATTTAACATCCGAGGACGAAAGGCCTCACAG
CTGAGCATCTTCATCTCCACGGTGATTCCTGGCTCTGAGGCACACTGAGCAGGACTTCAG
GAAGGGAACCAAGTCCTAGCTGTGAATGATGTGGATTTCCAAGATCTTGAGCATAGCAAG
GCTGTGGAGATCCTGAAGACAACCCACGAAATCAGCATGCATGCATGTCTCCTTCCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.05
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RVYHPDYNNELTQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTAREISMRVRFFP
RVY....NNEL..FLPRI.TLKKPPGAQ.GFNIRG.KASQL.IFIS.VIP.S.AH.AGLQEG.QVLAVNDVDFQD.EHSKAVEILKT..EISM.....P
Retrocopy
RVYRACCNNELSHFLPRIITLKKPPGAQWGFNIRGRKASQLSIFISTVIPGSEAH*AGLQEGNQVLAVNDVDFQDLEHSKAVEILKTTHEISMHACLLP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide