RetrogeneDB ID:
retro_ecab_941
Organism:
Horse ( Equus_caballus )
Location:
7:88922965-88924126 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
76.74 %
Coverage:
98.47 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
IDH3G
Parental gene aliases:
No gene alias available
Parental gene description:
isocitrate dehydrogenase 3 (NAD+) gamma [Source:HGNC Symbol;Acc:5386]

Genomic region (view in browser)





>retro_ecab_941
GTGGCCCTGAAGATGCTGACAGCTGCCGGTTTCTCTGGGAAGGCCATGTTCCGACCTTCC
ATTCTTGGCCATTCTTGGGAGATCTTACTTGGCCGTGAAACCTCCCTGAGGAGCTTTTCT
TCTAAACACAATATTCCTCCATCAGCCAAGTATGGTGGGCGGCACACTGTGACTATGATT
CCTGGGGATGGCATCGGGCCTGAACTTATGCTGCATGTCAAGACTGTGTTCAGACGTATG
TGTGTGCCTGTGGACTTTGAGGAGGTGCAGGTTAACTCCACTTCTTGCGAAGAGGACGTG
CATAATGCCATCATGGCAGTCCGTCGAAACCGTGTGGCCTTGAAGGGCAACATTGAAACT
GACCACAGTCTGCCACCATCTCACAAATCCCGCAACAGCCTGTTTCGCACCATGCTAGAT
CTCTATGCCAGTGTCATCCATTTTCAGAGTCTGCCGGGTGTGGAGACCCGGCACAAGAAC
GTAGACATCTTAGTTGTTCGGGAAAACACAGAGGGTGAATACAGCAACCTGGAGCATGAG
AGTGTGAAAGGAGTGATAGAGAGCCTAAAGATCATCACTAAGGCCAAGTCTTTGCGCATT
GCTGAATATGCCTTCCAGCTGGCCCAGGACATGGGGCGCAAGAAAGTGACAGCTGTGCAC
AAGGCCAACATCATGAAATTGGGAGATGGTCTCTTCCTCCAGTGCTGTAGGGAGGTGGCC
TCCCACTATCCTCAGCTCACCTTTGAAAGCATGATTGTCGATAACACTACCATGCAGCTG
GTATCCCGCCCCCAGCAGTTTGATGTCATGGTGATGCCCAATCTTTATGGCAACATTGTC
AACAATGTCTGCACAGGGTTGGTTGGAGGAGCAGGGCTTGTGCCTGGTGCCAACTATGGA
CACATATATGCAGTGTTTGAAACAGCTTCAAAGCAATCTGGCAAGAATATAGCCAATAAG
AATATGGCTAACCCTACTGCCATGCTGCTGTCGAGTTGTATTATGCTGGATTACCTCAAG
CTTCACTCCTATGCCACTTCCATACGTACTGCAGTCTTGGCATCCGTGGAGAATAAAAGT
GTCCATACTCCAGACATTGGAGGCCAGAGTACCACATTGGATTTCATTCAAAATATCATC
AACCACATCGATACTGTCAAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.26
SRP021940_placental_villous 0.22
SRP021940_synovial_membrane 0.03
SRP021940_testis 148.34

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MALKVATAAGGAAKAVLRPTLLCRPWEVLGAPRAPRRSFSQR-TIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVSSSADEEDI
.ALK..TAAG...KA..RP..L...WE.L.......RSFS....IPPSAKYGGRHTVTMIPGDGIGPELMLHVK.VFR..CVPVDFEEV.V.S...EED.
Retrocopy
VALKMLTAAGFSGKAMFRPSILGHSWEILLGRETSLRSFSSKHNIPPSAKYGGRHTVTMIPGDGIGPELMLHVKTVFRRMCVPVDFEEVQVNSTSCEEDV


Parental protein
RNAIMAIRRNRVALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVTRHRDIDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSLRI
.NAIMA.RRNRVALKGNIET.H.LPPSHKSRN...RT.LDLYA.VIH..SLPGV.TRH...DIL.VRENTEGEYS.LEHESV.GV.ESLKIITKAKSLRI
Retrocopy
HNAIMAVRRNRVALKGNIETDHSLPPSHKSRNSLFRTMLDLYASVIHFQSLPGVETRHKNVDILVVRENTEGEYSNLEHESVKGVIESLKIITKAKSLRI


Parental protein
AEYAFKLAQECGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG
AEYAF.LAQ..GRKKVTAVHKANIMKLGDGLFLQCC.EVA..YPQ.TFE.MIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVC.GLVGG.GLV.GANYG
Retrocopy
AEYAFQLAQDMGRKKVTAVHKANIMKLGDGLFLQCCREVASHYPQLTFESMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCTGLVGGAGLVPGANYG


Parental protein
HVYAVFETATRNTGKSIANKNVANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENMHTPDIGGQGTTSEAIQDIIRHIRIIN
H.YAVFETA....GK.IANKN.ANPTA.LL.SC.MLD.LKLHSYATSIR.AVLAS..N...HTPDIGGQ.TT...IQ.II.HI...N
Retrocopy
HIYAVFETASKQSGKNIANKNMANPTAMLLSSCIMLDYLKLHSYATSIRTAVLASVENKSVHTPDIGGQSTTLDFIQNIINHIDTVN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide