RetrogeneDB ID:
retro_ecab_946
Organism:
Horse ( Equus_caballus )
Location:
7:6197476-6198190 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
81.93 %
Coverage:
74.61 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
RFC5
Parental gene aliases:
No gene alias available
Parental gene description:
replication factor C (activator 1) 5, 36.5kDa [Source:HGNC Symbol;Acc:9973]

Genomic region (view in browser)





>retro_ecab_946
AAGCTGCTGCACCTGCTTCTCTATGATCCTCCAGGGACAGGAAAGACATCCACCATCGTA
GCCTGTGCTAAACAGCTGTACAAAGATAAAGAATTCAGCTCCATGGTCTTAGAGCTGAAT
GTTTCAGATGACCAAGGAATAGATATCATTTGGGGACTGATCCTGAGCTTTGCTAGCACA
GGGACACTATTTAAGAAAGGCTTTCAAATAGTGATCTTGGATGAAGCTGATGCCATGAGT
CAAGATGCCCAGAATGCCTTGAGGAGAGTGATTGAGAAATTTACTGAGAACACCAGATTT
TGCCTCATTTGTAACTGTCTGTCAAAGATCATCCCGACCTTGCAGTCCCGATACACAAGG
TTCTGATTTGCTCCCCTCACTCCTAAACTCATGGTTCCCTGCCTGGAACATGCTGTGGAA
GCAGAGAAAGTTGGTCTAAGCGTAGACAGGATGAAAGCACTTGTAACTCTCTCCAGTGGA
GACATGCGAAGGGCCCTGAACATTTTGCAGAGCACCAATATGGCCTTTGGAAAGGTGACA
GAGGAGACTGTCTACACCAGCACAGGGCACTCACTCAAGTCAGACGTCACCAACATTCCA
GACTGGGTGTTGAATCAAGACTTCACCACAGCCTACAGGAATGTTAGGGAGCTGAACACT
CTGAGGGGCTTGGCGTTACGTGATATCCTGACAAAGATATACTTGCTTGTGCAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRF
.L.HLLLY.PPGTGKTSTI.ACAKQLYKDKEF.SMVLELN.SDD.GIDI..G.ILSFAST.T.FKKGF..VILDEADAM.QDAQNALRRVIEKFTENTRF
Retrocopy
KLLHLLLYDPPGTGKTSTIVACAKQLYKDKEFSSMVLELNVSDDQGIDIIWGLILSFASTGTLFKKGFQIVILDEADAMSQDAQNALRRVIEKFTENTRF


Parental protein
CLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVVEEEKVAISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANIL
CLICN.LSKIIP.LQSR.TRF.F.PLTP.LMVP.L.H.VE.EKV..S.D.MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYT.TGH.LKSD..NI.
Retrocopy
CLICNCLSKIIPTLQSRYTRF*FAPLTPKLMVPCLEHAVEAEKVGLSVDRMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTSTGHSLKSDVTNIP


Parental protein
DWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVH
DW.LNQDFTTAYRN..EL.TL.GLAL.DILT.I.L.VH
Retrocopy
DWVLNQDFTTAYRNVRELNTLRGLALRDILTKIYLLVH


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide