RetrogeneDB ID:
retro_ecab_947
Organism:
Horse ( Equus_caballus )
Location:
7:7813147-7817743 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
87.26 %
Coverage:
99.87 %
Frameshifts:
0
Stop codons:
0
Parental gene:
Parental gene symbol:
CAMSAP1
Parental gene aliases:
No gene alias available
Parental gene description:
calmodulin regulated spectrin-associated protein 1 [Source:HGNC Symbol;Acc:19946]
Genomic region (view in browser)
>retro_ecab_947
GATAACATCCCCGAGGACCTCAGGGACCCCTTTTACATCGACCAGTATGAGCAGGAGCAC
ATCAAGCCGCTTGTCATCAAGCTCCTGCTGTCCAGCGAGTTGTACTGCCGTGTCTGCAGC
CTCATCCTGAAAGGTGACCAGGTGGCCTCCTTACAGGGACATCAGTCTGTCATCCAGGCC
CTGTCCCGGAAAGGGATTTACGTGATGGAGAGCGATGACACCCCCGTGACGGACCCCGAC
CTCAGCCGCGCACCAATAAAGATGAGTGCCCATATGGCGATGGTGGACGCCCTCATGATG
GCCTACACCGTGGAGATGATCAGCATCAAGAAGGTCGTGGCCAGCGTCAAGCGCTTCTCG
ACATTCAGTGCCTCGAAGGAGCTTCCCTATGACCTCGAGGATGCCATGGTGTTCTGGGTC
AACAAGGTAAATCTTAAAATGAGAGAGATAACAGAGAAAGAAGTGAAGTTAAAACAACAG
TTGTTGGAAAGTCCAGCCCATCATCAAAAGGTGCACTATCGCCGAGAGCACCTGTCTGCG
AGGCAGCCGCCCTACTTCCCGTTGTTGGAGGACCTGATGAGAGACAGCAGCGATGGGGCT
GCTCTCTCGGCTGTGGTCCACTACTACTGCCCAGAGCAGATGAAGCTGGATGATATATGC
TTGAACGAGGTAACATCGATGGCTGACAGTCTGTATAATATTCGGCTTCTGAGAGAATTC
TCAAATGAGTATCTTAACAAATGCTTTTATCTCACCTTAGAAGATATGCTGTATGCGCCC
TTAGTGTTGAAACCCAATGTTATGGTTTTTATTGCTGAACTCTTCCGGTGGTTTGAGAAT
GTCAAACCAGATTTTGTTCAACCCACGGATGTTCAGGAACTGAAAGATGCTAAAACAGTG
TCACACCAAAAAAGCAGTCGGCCTCCTGTTCCTATCTCCAATGCCACCAAGCACAGCTTC
CTGGGGAGCCCCGCAGCAGCAAGCCTGGTTGATCTGCAGCCCCCCACCCAGCCGCCAGCC
GAGGGTTGTCACAGGCACCACCTGCACCCCGAAGAGTCTGAACATCTGGGGAAAGGGGCC
TCTGCCTTTAGCCCATCACATCCTTTATTGCCACTGAGACAGAAACAGCAAAAGACGATG
CAGGGAGAGGAGTCCCCCAATGAGCAACACCGATGTAATTCTTTAACGCGAGTTGATGGT
CAGCCACCAGGTGCAGCAGCAGCGTGCCCAGAGAAGAAGAACAGGCCTGTGTTTCAGCCA
GCACCCTTTGCTCTTCATCATGCTGCGAGCTGCGATCTGGACCCTGGCTCTGGTGACAGC
GTCAGCTTGGCCCGCCCCATCAGCAAGGATAGTTTGGCATCCAATATCGTTAATCTGACC
CCACAGAACCAGCCGCACCCCACAACCCTAAAGACCAATGGGAAAAGCCTCCTGAACAAT
GTCGATATTGAGGATGAGGATGAAGAGCTTGTGGCCATCATTAGAATGGATGTGGCTCCC
CACAGCGGTGAGCTGGGCCTGATGGCAAGTGCCCGATCTCCCCAGAGACTGGCGGACACC
TTAGAAAGTAAGCCTGACAGTTTCTTCTTGGAGCCGTTGATGCCAGTCGTGCTTAGGCCA
GCTAAAGAGAAGCAGATGATTACCAAGGAGGATGAGTGTGGAGAAGGGCAGCTAAGGAGC
TTCGCCTCCAAGAAGTCCAGCGAGGGCCACAAGCCTCTGCTGTGGAAGAAGGCATCCAGC
GGTCATGTCAGTGGAGACTTGAATAAGACTTTCACTCCCATCTGTTCAGAACTTCCTGTG
GGTTTGGACCCTGTGCCTGCTGAGGCAGGGCCGCAGGTGGTGGGGGAAGCCTGTGGTAGG
CCTCTGGCCAGTGGCGGTTTTGATCCATTATCTCAGGGACAGTCTGCCGGCGGCTTCTTT
CTTCATGTAGCCAGAGCCAATGAATACATGGAGGGCAGGTTCTATGTTAGCTGTGCAAAA
AGTCCCAACGCCCACGATCCAGAGCCATGGACTGTCCTGAGGCAGGACTCCGACTCGGAC
ATTGCAGATCTAGAGGAAGCTGAGCACGATTTACTTGGTGAGGACCACCCTGTGGTGATC
ACTAAGTATGTCGGTGAGGAGGAGTCAGCAAAGCTGCACGAGGATCTGAAAGTGAAAGAT
CATGAGGACAAGGATGACGCCAGTGGCCGCTCGAGCCCATGTCTGAGCACCGTCTCTCAG
ATCAGCAGCGTCTCCATGGCGAGCGGGAGCGTGAAGATGACCAGCTTCGCGGAAAGGAAG
CTCCAGAGGCTCAACAGCTGTGAGACCAAGTCCAGCACCAGCAGCTCCCAGAAGACCACG
CCCGATGGCTCAGAGAGCTGCCCGCCCCCACTGACGACCTGGAAGCAAAGGAGAGAGCAG
AGTCCGAGCAGGCAGAGCAAGGATCACGTCAGCCTCCTGGCGTCCGAACTGGTGCAGCTC
CACATGCAGCTGGAGGAGAAACGGAGAGCCATCGAAGCGCAGAAGAAGAAGATGGAGACT
CTGTCCGCCAGGCAGCGACTGAAGCTGGGGAAGGCAGCCTTCCTGCACGTGGTCAAGAAA
GGCAACGCTGATGTCGTCCCCCAGCCGCTTAAACCAGAACACTTCGCTAGAGAGTATTCT
CAGCACAACGGAGAGGACTTTGATGGTGGCGTTTCCAAGATGGAAGAATTTTTTGTTAAG
GAACAAAGGAGAGAGGATCTCCTTAGTGAGTCTCAAGACGTGGAGAGGGAAAGCCTGGCT
TTCATTCAGCAGCATAAACTGAAAGACCCTGCCACTCTCCACGACCTGGAGAAGCACAAA
GCGCTCTCTGCTGCTCTCCTGGAAGACGGCGCTGGGGAGGTGGGGGACGTGAGCGAGTGC
GACCTTTCTACTGAGAAACTTAACGAGACCATCAGCACACTGCAGCAGGCGATTCTGAAG
ATTTCTCAGCAGCAAGAGCAGCTGCTTATGAAATCCCCCACAGCACCAGCTCCACATTCT
AAGAACTCCCAGGACCAGAGAGTCAAAGCAGCCATCCACTTCGTTGAGCCACTCTCTCCC
ACTGGAGTGACGGGTCACCGCAAACCCCCTCGTCTTGGTCAGGGTCGGAATTCCCGTTCA
GGAAGACAGGCTGACCTGAAGGTCCCGAAAGACAGACAGCAGGGTTCCTCCCGGAGCAAG
ACCCCGACGCCCAGTATAGAGATTCTCCCCTACTTACGGTCCTTCCCTCCTCGGACGCCC
TCTGACCCGGGCTGGGACTGTGGTGCAGACCCAGGGAGTGACCCTCATGAGAAGTGCTTC
TTCGACAGTTACAGGCTCCATGATGAGAGCAATCAGCAGACATTTGTCTTGTCCTCCTCC
AAAGATGCAAACACTATATTGGAACAAACGAGCCTCAAAGAGGCTCTGGACGGCAGCGAG
AAGGAGGCGGGGCTCAGCGCCCCGGCTGGCTCCGGCAAGGAGAACGGGCCTGTGGACGAG
CCCCCGAGGAGCAAGGCCAGCCTCATCGAGGTGGACCTCTCAGACCTGAAGGCCCCTGAC
GAGGACGGAGAGAGGGAAGGCCACGAGAGCTCTGTGGACCTCAGCACTGACGGCGATCAG
AAGCCGGAAGTCGTCGTCTTCTTTAAGGATGAACAGAAGGCGGAAGATGAGCTCGCCAGG
AAGCGGGCGGCCTTCCTCCTGAAGCAGCAGCTGGAAATAGAAGTAGAGCTCAAGAGAGAC
GAGGCCAGGCGTAAAGCCGAAGAAGATCGGATACGGAAGGAGGAAGAGAAGGCGCGATCA
GAGCTCATCAAACAGGAATACTCGCGGAGGAAGCAGCAACAGATGTTAGAAGAACAAGGA
CTGGGAAAACCTAAATCGAAGCCAAAAAAGCCGCGGCCAAAGTCAGTCCATCGGGAAGAG
TCGTGTAGCGACTCGGGAACCAAGTGCTCCTCAACCCCTGATAACCTGAGCCGGGCCCAG
TCGGGCTCCAACCTGTCCTTGGGCTCCGGCCTGTCCTTGGCCTCCGCAGCAACGACTGAG
CCCGAGAGCATTCATTCAGGGGGCACGCCTTCCCAGCGCAGAGTCGAGTCCCTGGAAATC
CTGCCCGTATTAAGGCGCAACCCGAGCAGAAGCACAGACAGAGACTGGGAGACGGCGTCT
GCAGCGTCCTCCCTCGCCTCGGTGGCCGAGTACACAGGTCCCAAGCTCTTTAAGGAGCCC
AGTAACAAATCCAACAAACCGATCGTTCATAATGCTGCGTCCAATTGCTGTCTGGCTGGA
AAAGTGAATGAACCTCACAAGAATTCAGTATTAGAGGAGCTAGAGAAGTGTGACACCAAT
CACTACATCATACTGTTTCGTGATGCCGGCTGCCAGTTCGGGGCACTTTACTGGTGCTAT
CCAGACACTGAGGAAATCTACAAATTAACTGGAATGGGGCCAAAGAGCATTACCAAGAAA
ATGATCGACAAACTGTATAAATACAGCTCAGACCGGAAACAGTTTAACCTGATCCCAGCC
AAAACCATGTCCGTCAGTGTGGATGCTCTCACTATCCACAACCACCTGTGGCAGCCCAAG
TGGCCTGCAGCACCAAAGAAGACCCAGACTCATAAA
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.23 |
| SRP021940_cerebellum | 1.74 |
| SRP021940_embryo | 3.55 |
| SRP021940_placental_villous | 0.67 |
| SRP021940_synovial_membrane | 1.07 |
| SRP021940_testis | 10.62 |
Parental protein coverage
Changes in the retrocopy sequence
