RetrogeneDB ID:
retro_ecab_947
Organism:
Horse ( Equus_caballus )
Location:
7:7813147-7817743 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
87.26 %
Coverage:
99.87 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CAMSAP1
Parental gene aliases:
No gene alias available
Parental gene description:
calmodulin regulated spectrin-associated protein 1 [Source:HGNC Symbol;Acc:19946]

Genomic region (view in browser)





>retro_ecab_947
GATAACATCCCCGAGGACCTCAGGGACCCCTTTTACATCGACCAGTATGAGCAGGAGCAC
ATCAAGCCGCTTGTCATCAAGCTCCTGCTGTCCAGCGAGTTGTACTGCCGTGTCTGCAGC
CTCATCCTGAAAGGTGACCAGGTGGCCTCCTTACAGGGACATCAGTCTGTCATCCAGGCC
CTGTCCCGGAAAGGGATTTACGTGATGGAGAGCGATGACACCCCCGTGACGGACCCCGAC
CTCAGCCGCGCACCAATAAAGATGAGTGCCCATATGGCGATGGTGGACGCCCTCATGATG
GCCTACACCGTGGAGATGATCAGCATCAAGAAGGTCGTGGCCAGCGTCAAGCGCTTCTCG
ACATTCAGTGCCTCGAAGGAGCTTCCCTATGACCTCGAGGATGCCATGGTGTTCTGGGTC
AACAAGGTAAATCTTAAAATGAGAGAGATAACAGAGAAAGAAGTGAAGTTAAAACAACAG
TTGTTGGAAAGTCCAGCCCATCATCAAAAGGTGCACTATCGCCGAGAGCACCTGTCTGCG
AGGCAGCCGCCCTACTTCCCGTTGTTGGAGGACCTGATGAGAGACAGCAGCGATGGGGCT
GCTCTCTCGGCTGTGGTCCACTACTACTGCCCAGAGCAGATGAAGCTGGATGATATATGC
TTGAACGAGGTAACATCGATGGCTGACAGTCTGTATAATATTCGGCTTCTGAGAGAATTC
TCAAATGAGTATCTTAACAAATGCTTTTATCTCACCTTAGAAGATATGCTGTATGCGCCC
TTAGTGTTGAAACCCAATGTTATGGTTTTTATTGCTGAACTCTTCCGGTGGTTTGAGAAT
GTCAAACCAGATTTTGTTCAACCCACGGATGTTCAGGAACTGAAAGATGCTAAAACAGTG
TCACACCAAAAAAGCAGTCGGCCTCCTGTTCCTATCTCCAATGCCACCAAGCACAGCTTC
CTGGGGAGCCCCGCAGCAGCAAGCCTGGTTGATCTGCAGCCCCCCACCCAGCCGCCAGCC
GAGGGTTGTCACAGGCACCACCTGCACCCCGAAGAGTCTGAACATCTGGGGAAAGGGGCC
TCTGCCTTTAGCCCATCACATCCTTTATTGCCACTGAGACAGAAACAGCAAAAGACGATG
CAGGGAGAGGAGTCCCCCAATGAGCAACACCGATGTAATTCTTTAACGCGAGTTGATGGT
CAGCCACCAGGTGCAGCAGCAGCGTGCCCAGAGAAGAAGAACAGGCCTGTGTTTCAGCCA
GCACCCTTTGCTCTTCATCATGCTGCGAGCTGCGATCTGGACCCTGGCTCTGGTGACAGC
GTCAGCTTGGCCCGCCCCATCAGCAAGGATAGTTTGGCATCCAATATCGTTAATCTGACC
CCACAGAACCAGCCGCACCCCACAACCCTAAAGACCAATGGGAAAAGCCTCCTGAACAAT
GTCGATATTGAGGATGAGGATGAAGAGCTTGTGGCCATCATTAGAATGGATGTGGCTCCC
CACAGCGGTGAGCTGGGCCTGATGGCAAGTGCCCGATCTCCCCAGAGACTGGCGGACACC
TTAGAAAGTAAGCCTGACAGTTTCTTCTTGGAGCCGTTGATGCCAGTCGTGCTTAGGCCA
GCTAAAGAGAAGCAGATGATTACCAAGGAGGATGAGTGTGGAGAAGGGCAGCTAAGGAGC
TTCGCCTCCAAGAAGTCCAGCGAGGGCCACAAGCCTCTGCTGTGGAAGAAGGCATCCAGC
GGTCATGTCAGTGGAGACTTGAATAAGACTTTCACTCCCATCTGTTCAGAACTTCCTGTG
GGTTTGGACCCTGTGCCTGCTGAGGCAGGGCCGCAGGTGGTGGGGGAAGCCTGTGGTAGG
CCTCTGGCCAGTGGCGGTTTTGATCCATTATCTCAGGGACAGTCTGCCGGCGGCTTCTTT
CTTCATGTAGCCAGAGCCAATGAATACATGGAGGGCAGGTTCTATGTTAGCTGTGCAAAA
AGTCCCAACGCCCACGATCCAGAGCCATGGACTGTCCTGAGGCAGGACTCCGACTCGGAC
ATTGCAGATCTAGAGGAAGCTGAGCACGATTTACTTGGTGAGGACCACCCTGTGGTGATC
ACTAAGTATGTCGGTGAGGAGGAGTCAGCAAAGCTGCACGAGGATCTGAAAGTGAAAGAT
CATGAGGACAAGGATGACGCCAGTGGCCGCTCGAGCCCATGTCTGAGCACCGTCTCTCAG
ATCAGCAGCGTCTCCATGGCGAGCGGGAGCGTGAAGATGACCAGCTTCGCGGAAAGGAAG
CTCCAGAGGCTCAACAGCTGTGAGACCAAGTCCAGCACCAGCAGCTCCCAGAAGACCACG
CCCGATGGCTCAGAGAGCTGCCCGCCCCCACTGACGACCTGGAAGCAAAGGAGAGAGCAG
AGTCCGAGCAGGCAGAGCAAGGATCACGTCAGCCTCCTGGCGTCCGAACTGGTGCAGCTC
CACATGCAGCTGGAGGAGAAACGGAGAGCCATCGAAGCGCAGAAGAAGAAGATGGAGACT
CTGTCCGCCAGGCAGCGACTGAAGCTGGGGAAGGCAGCCTTCCTGCACGTGGTCAAGAAA
GGCAACGCTGATGTCGTCCCCCAGCCGCTTAAACCAGAACACTTCGCTAGAGAGTATTCT
CAGCACAACGGAGAGGACTTTGATGGTGGCGTTTCCAAGATGGAAGAATTTTTTGTTAAG
GAACAAAGGAGAGAGGATCTCCTTAGTGAGTCTCAAGACGTGGAGAGGGAAAGCCTGGCT
TTCATTCAGCAGCATAAACTGAAAGACCCTGCCACTCTCCACGACCTGGAGAAGCACAAA
GCGCTCTCTGCTGCTCTCCTGGAAGACGGCGCTGGGGAGGTGGGGGACGTGAGCGAGTGC
GACCTTTCTACTGAGAAACTTAACGAGACCATCAGCACACTGCAGCAGGCGATTCTGAAG
ATTTCTCAGCAGCAAGAGCAGCTGCTTATGAAATCCCCCACAGCACCAGCTCCACATTCT
AAGAACTCCCAGGACCAGAGAGTCAAAGCAGCCATCCACTTCGTTGAGCCACTCTCTCCC
ACTGGAGTGACGGGTCACCGCAAACCCCCTCGTCTTGGTCAGGGTCGGAATTCCCGTTCA
GGAAGACAGGCTGACCTGAAGGTCCCGAAAGACAGACAGCAGGGTTCCTCCCGGAGCAAG
ACCCCGACGCCCAGTATAGAGATTCTCCCCTACTTACGGTCCTTCCCTCCTCGGACGCCC
TCTGACCCGGGCTGGGACTGTGGTGCAGACCCAGGGAGTGACCCTCATGAGAAGTGCTTC
TTCGACAGTTACAGGCTCCATGATGAGAGCAATCAGCAGACATTTGTCTTGTCCTCCTCC
AAAGATGCAAACACTATATTGGAACAAACGAGCCTCAAAGAGGCTCTGGACGGCAGCGAG
AAGGAGGCGGGGCTCAGCGCCCCGGCTGGCTCCGGCAAGGAGAACGGGCCTGTGGACGAG
CCCCCGAGGAGCAAGGCCAGCCTCATCGAGGTGGACCTCTCAGACCTGAAGGCCCCTGAC
GAGGACGGAGAGAGGGAAGGCCACGAGAGCTCTGTGGACCTCAGCACTGACGGCGATCAG
AAGCCGGAAGTCGTCGTCTTCTTTAAGGATGAACAGAAGGCGGAAGATGAGCTCGCCAGG
AAGCGGGCGGCCTTCCTCCTGAAGCAGCAGCTGGAAATAGAAGTAGAGCTCAAGAGAGAC
GAGGCCAGGCGTAAAGCCGAAGAAGATCGGATACGGAAGGAGGAAGAGAAGGCGCGATCA
GAGCTCATCAAACAGGAATACTCGCGGAGGAAGCAGCAACAGATGTTAGAAGAACAAGGA
CTGGGAAAACCTAAATCGAAGCCAAAAAAGCCGCGGCCAAAGTCAGTCCATCGGGAAGAG
TCGTGTAGCGACTCGGGAACCAAGTGCTCCTCAACCCCTGATAACCTGAGCCGGGCCCAG
TCGGGCTCCAACCTGTCCTTGGGCTCCGGCCTGTCCTTGGCCTCCGCAGCAACGACTGAG
CCCGAGAGCATTCATTCAGGGGGCACGCCTTCCCAGCGCAGAGTCGAGTCCCTGGAAATC
CTGCCCGTATTAAGGCGCAACCCGAGCAGAAGCACAGACAGAGACTGGGAGACGGCGTCT
GCAGCGTCCTCCCTCGCCTCGGTGGCCGAGTACACAGGTCCCAAGCTCTTTAAGGAGCCC
AGTAACAAATCCAACAAACCGATCGTTCATAATGCTGCGTCCAATTGCTGTCTGGCTGGA
AAAGTGAATGAACCTCACAAGAATTCAGTATTAGAGGAGCTAGAGAAGTGTGACACCAAT
CACTACATCATACTGTTTCGTGATGCCGGCTGCCAGTTCGGGGCACTTTACTGGTGCTAT
CCAGACACTGAGGAAATCTACAAATTAACTGGAATGGGGCCAAAGAGCATTACCAAGAAA
ATGATCGACAAACTGTATAAATACAGCTCAGACCGGAAACAGTTTAACCTGATCCCAGCC
AAAACCATGTCCGTCAGTGTGGATGCTCTCACTATCCACAACCACCTGTGGCAGCCCAAG
TGGCCTGCAGCACCAAAGAAGACCCAGACTCATAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.23
SRP021940_cerebellum 1.74
SRP021940_embryo 3.55
SRP021940_placental_villous 0.67
SRP021940_synovial_membrane 1.07
SRP021940_testis 10.62

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DNIPEDLRDPFYIDQYEQEHIKPPVIKLLLSSELYCRVCSLILKGDQVAALQGHQSVIQALSRKGIYVMESDDTPVTDPDLSRAPIKMSAHMAMVDALMM
DNIPEDLRDPFYIDQYEQEHIKP.VIKLLLSSELYCRVCSLILKGDQVA.LQGHQSVIQALSRKGIYVMESDDTPVTDPDLSRAPIKMSAHMAMVDALMM
Retrocopy
DNIPEDLRDPFYIDQYEQEHIKPLVIKLLLSSELYCRVCSLILKGDQVASLQGHQSVIQALSRKGIYVMESDDTPVTDPDLSRAPIKMSAHMAMVDALMM


Parental protein
AYTVEMISIEKVVASVKRFSTFSASKELPYDLEDAMVFWVNKVNLKMREITEKEVKLKQQLLESPAR-QKVRYRREHLSARQPPCFPLLEDLMRDSSDGA
AYTVEMISI.KVVASVKRFSTFSASKELPYDLEDAMVFWVNKVNLKMREITEKEVKLKQQLLESPA..QKV.YRREHLSARQPP.FPLLEDLMRDSSDGA
Retrocopy
AYTVEMISIKKVVASVKRFSTFSASKELPYDLEDAMVFWVNKVNLKMREITEKEVKLKQQLLESPAHHQKVHYRREHLSARQPPYFPLLEDLMRDSSDGA


Parental protein
ALLAVVHFYCPEQMKLDDICLKEVTSMADSLYNIRLLREFSNEYLNKCFYLTLEDMLYAPLVLKPNVMVFIAELFWWFENVKPDFVQPRDVQELKDAKTV
AL.AVVH.YCPEQMKLDDICL.EVTSMADSLYNIRLLREFSNEYLNKCFYLTLEDMLYAPLVLKPNVMVFIAELF.WFENVKPDFVQP.DVQELKDAKTV
Retrocopy
ALSAVVHYYCPEQMKLDDICLNEVTSMADSLYNIRLLREFSNEYLNKCFYLTLEDMLYAPLVLKPNVMVFIAELFRWFENVKPDFVQPTDVQELKDAKTV


Parental protein
SHQKSSRPPVPISNATKRSFLGSPAAASPADLQSSTQLPAEGCPRHHLHPEESEHLGKGASAFSPSHPLLPLRQKQQKTMQGEECPDQRHRSNSLTRVDG
SHQKSSRPPVPISNATK.SFLGSPAAAS..DLQ..TQ.PAEGC.RHHLHPEESEHLGKGASAFSPSHPLLPLRQKQQKTMQGEE.P...HR.NSLTRVDG
Retrocopy
SHQKSSRPPVPISNATKHSFLGSPAAASLVDLQPPTQPPAEGCHRHHLHPEESEHLGKGASAFSPSHPLLPLRQKQQKTMQGEESPNEQHRCNSLTRVDG


Parental protein
QPRGAAAAWAEKKNRPVSQPAPVALHHAASCDLDPGSGDSVSLARSISKDSLASNIVNLTPQNQPHPTALKTNGKSLLNNVDIEDEDEELVAIIRTDVAP
QP.GAAAA..EKKNRPV.QPAP.ALHHAASCDLDPGSGDSVSLAR.ISKDSLASNIVNLTPQNQPHPT.LKTNGKSLLNNVDIEDEDEELVAIIR.DVAP
Retrocopy
QPPGAAAACPEKKNRPVFQPAPFALHHAASCDLDPGSGDSVSLARPISKDSLASNIVNLTPQNQPHPTTLKTNGKSLLNNVDIEDEDEELVAIIRMDVAP


Parental protein
HSGDLGLMASARSPQRLADTLESKPDSFFLEPLMPAVLRPAKEKQMITKEDECGEGRPRSFTSKRSSEGYQPLLRKKASSGHVSRDLNRTFTPICSELPV
HSG.LGLMASARSPQRLADTLESKPDSFFLEPLMP.VLRPAKEKQMITKEDECGEG..RSF.SK.SSEG..PLL.KKASSGHVS.DLN.TFTPICSELPV
Retrocopy
HSGELGLMASARSPQRLADTLESKPDSFFLEPLMPVVLRPAKEKQMITKEDECGEGQLRSFASKKSSEGHKPLLWKKASSGHVSGDLNKTFTPICSELPV


Parental protein
GLDPVPAEAGPQVVGEACGRPLASGGFDPLSQGQSADGFFLHVARAEEDTEGRFYVSCAKSPNAHHPEPWTVLRQDSDSDIADLEEAEHDLLGEDHPVVI
GLDPVPAEAGPQVVGEACGRPLASGGFDPLSQGQSA.GFFLHVARA.E..EGRFYVSCAKSPNAH.PEPWTVLRQDSDSDIADLEEAEHDLLGEDHPVVI
Retrocopy
GLDPVPAEAGPQVVGEACGRPLASGGFDPLSQGQSAGGFFLHVARANEYMEGRFYVSCAKSPNAHDPEPWTVLRQDSDSDIADLEEAEHDLLGEDHPVVI


Parental protein
TKYVGEEESAKLQEDLKVKEHEDKDDASGRSSPCLSTVSQISSVSMASGSVKMTSFAERKLQRLNSCETKSSTSSSQKTTPDGSESCPPPLTTWKQRREQ
TKYVGEEESAKL.EDLKVK.HEDKDDASGRSSPCLSTVSQISSVSMASGSVKMTSFAERKLQRLNSCETKSSTSSSQKTTPDGSESCPPPLTTWKQRREQ
Retrocopy
TKYVGEEESAKLHEDLKVKDHEDKDDASGRSSPCLSTVSQISSVSMASGSVKMTSFAERKLQRLNSCETKSSTSSSQKTTPDGSESCPPPLTTWKQRREQ


Parental protein
SPSRQSKDHASLLASELVQLHMQLEEKRRAIEAQKKKMETLSARQRLKLGKAAFLHVVKKGKADVVPQPLKPEHFAREYSQHNGEDFDGGVSKMEEFLVK
SPSRQSKDH.SLLASELVQLHMQLEEKRRAIEAQKKKMETLSARQRLKLGKAAFLHVVKKG.ADVVPQPLKPEHFAREYSQHNGEDFDGGVSKMEEF.VK
Retrocopy
SPSRQSKDHVSLLASELVQLHMQLEEKRRAIEAQKKKMETLSARQRLKLGKAAFLHVVKKGNADVVPQPLKPEHFAREYSQHNGEDFDGGVSKMEEFFVK


Parental protein
EEGREDLLSESQDVDRESLAFIQQHKPKDPATLHDLEKHKALSAALLEDSAGEVGDVSECDLSIEKLNETISTLQQAILKISQQQEQLLMKSPTAPAPGS
E..REDLLSESQDV.RESLAFIQQHK.KDPATLHDLEKHKALSAALLED.AGEVGDVSECDLS.EKLNETISTLQQAILKISQQQEQLLMKSPTAPAP.S
Retrocopy
EQRREDLLSESQDVERESLAFIQQHKLKDPATLHDLEKHKALSAALLEDGAGEVGDVSECDLSTEKLNETISTLQQAILKISQQQEQLLMKSPTAPAPHS


Parental protein
KNNSQDQRVKTAIHFVEPLSPTGVTGHRKPPRLGQGRNSRSGRPADLKVPKDRQQGSSRSKTPTPSIETLPHLRSFPPRTPSDPGWDGGADPGSDPQEKC
K.NSQDQRVK.AIHFVEPLSPTGVTGHRKPPRLGQGRNSRSGR.ADLKVPKDRQQGSSRSKTPTPSIE.LP.LRSFPPRTPSDPGWD.GADPGSDP.EKC
Retrocopy
K-NSQDQRVKAAIHFVEPLSPTGVTGHRKPPRLGQGRNSRSGRQADLKVPKDRQQGSSRSKTPTPSIEILPYLRSFPPRTPSDPGWDCGADPGSDPHEKC


Parental protein
FFDSYRLHDESNQRTFVLSSSKDANIILEQTSLKEALDGGEKEAGLSAPAGSGKENGPVDEPPRSKASLIEVDLSDLKAPDEDGETEGHESSVDLSTDGD
FFDSYRLHDESNQ.TFVLSSSKDAN.ILEQTSLKEALDG.EKEAGLSAPAGSGKENGPVDEPPRSKASLIEVDLSDLKAPDEDGE.EGHESSVDLSTDGD
Retrocopy
FFDSYRLHDESNQQTFVLSSSKDANTILEQTSLKEALDGSEKEAGLSAPAGSGKENGPVDEPPRSKASLIEVDLSDLKAPDEDGEREGHESSVDLSTDGD


Parental protein
QKPGVGFFFKDEQKAEDELAKKRAAFLLKQQRKAEEARVRKQQLEAEVELKRDEARRKAEEDRIRKEEEKARRELIKQEYLRRKQQQILEEQGLGKPKSK
QKP.V..FFKDEQKAEDELA.KRAAFLLKQQ...E...V.....EA......D..R...EE...R.E..K......KQ......Q..........KP..K
Retrocopy
QKPEVVVFFKDEQKAEDELARKRAAFLLKQQLEIE---VELKRDEARRKAEEDRIRK--EEEKARSELIKQEYSRRKQQQMLEEQGLGKPKSKPKKPRPK


Parental protein
PKKPRPKSVHREESCSDSGTKCSSTPDNLSRAQSGSSLSLASAATTEPESVHSGGTPSQRVESLEALPVLSRNPSRSTDRDWETASAASSLASVAEYTGP
..............CS......S...................A.T........G.....RVESLE.LPVL.RNPSRSTDRDWETASAASSLASVAEYTGP
Retrocopy
SVHREESCSDSGTKCSSTPDNLSRAQXXXXXXXXXXXXXXXXATTEPESIHSGGTPSQRRVESLEILPVLRRNPSRSTDRDWETASAASSLASVAEYTGP


Parental protein
KLFKEPSSKSNKPIIHNAVSHCCLAGKVNEPHKNSILEAREKCDANHYIILFRDAGCQFRALYCYYPDTEEIYKLTGTGPKSITKKMIDKLYKYSSDRKQ
KLFKEPS.KSNKPI.HNA.S.CCLAGKVNEPHKNS.LE..EKCD.NHYIILFRDAGCQF.ALY..YPDTEEIYKLTG.GPKSITKKMIDKLYKYSSDRKQ
Retrocopy
KLFKEPSNKSNKPIVHNAASNCCLAGKVNEPHKNSVLEELEKCDTNHYIILFRDAGCQFGALYWCYPDTEEIYKLTGMGPKSITKKMIDKLYKYSSDRKQ


Parental protein
FNLIPAKTMSVSVDALTIHNHLWQPKRPAAPKKTQTRK
FNLIPAKTMSVSVDALTIHNHLWQPK.PAAPKKTQT.K
Retrocopy
FNLIPAKTMSVSVDALTIHNHLWQPKWPAAPKKTQTHK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide