RetrogeneDB ID:
retro_ecab_948
Organism:
Horse ( Equus_caballus )
Location:
7:12279397-12279784 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.57 %
Coverage:
64.65 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
SAR1B
Parental gene aliases:
No gene alias available
Parental gene description:
SAR1 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:10535]

Genomic region (view in browser)





>retro_ecab_948
ATGTCCTTCATGTAACGTTGGATTTACAGTGGTTTCAGCAGTTTGCAACAGTTTTTAGGA
TTACATAACAAGATTGGTAAATTGGTATTTCGTGGATTGAATAATGTGGGGAAAACAACA
TTGCCACACATGCTAAAAGATGACAGACTTGGACAACATGTCCCGACGTCACACATCCCA
CTTCACGAGAACTAACCATTTCTGGCATGACCTTTACAATTTTTGATTTGGGTGCACATG
TTCAAGCTCAAAGAGTATGGAAAAACTACCTTTCTGCTATCAATGGCATCGTATTTCTCG
TGGATTGTGCAAACCGTGAAAGGCTGTTAGAATCAAAACAAGAAGTTGATTCACTAGTTG
ATAAGTGATACCATTGCTAACATGCCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLH-PTSE-ELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVF
MSF...WIYSGFSS..QFLGL..K.GKLVF.GL.N.GKTTL.HMLKDDRLGQHVPT.H.P..E.ELTI.GMTFT.FDLG.HVQA.RVWKNYL.AINGIVF
Retrocopy
MSFM*RWIYSGFSSLQQFLGLHNKIGKLVFRGLNNVGKTTLPHMLKDDRLGQHVPTSHIPLHE/ELTISGMTFTIFDLGAHVQAQRVWKNYLSAINGIVF


Parental protein
LVDCADHERLLESKEELDSL-MTDETIANVP
LVDCA..ERLLESK.E.DSL.....TIAN.P
Retrocopy
LVDCANRERLLESKQEVDSL\LISDTIANMP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide