RetrogeneDB ID:
retro_ecab_949
Organism:
Horse ( Equus_caballus )
Location:
7:17801693-17802243 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
61.05 %
Coverage:
64.51 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
RPS2
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S2 [Source:HGNC Symbol;Acc:10404]

Genomic region (view in browser)





>retro_ecab_949
AAGATTTTGAAGATTATACTCATGCAAAAGCAGAGTCATGCTGGCCAGTGGACCAGGTTC
AAGGTATTTGTCGCCATCAGAGATTACAACAGACATGTCAGTGTGGAAGTTAAGTGCTCC
AAGGAGGTGGCCACTGCCTTCCACAGGCTATCATCCAAGCTCTCCATCACTGCAGTGGGG
TGAGGCTACTGGCGGAACAAGATCAGCAAGCCCTACACCATCCTTTGTCACCGGCAGCTC
TATGCTAGTGCATCTCATGCTCACCCCCAGGGGTACTAACATCGTCTACGCCTCTGTGCC
CAAGAAGCTGCCGTTGATGCCTAGTATGGACAACAGCTGCACTTCAGCCAGGGGCTGCAA
TGCCACCCTGGGCAACTCTGCCAAGGCCACCTGTGACGCCATCTCCAAGACCCACAGCTG
TGTCACCCCCAACCTCTGCAGAGAGACCATGTTCACCAAGTGTCCCTATCAGGAATTCAC
TGACCATCTCATAAAGACCCACACCAGAGTCTCCATGTAGAGGATCCAGGCTCCAGCTGT
AGTCGCCACA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYW-GNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTG
..LKI...QKQ..AGQ.TRFK.FVAI.DYN.HV...VKCSKEVATA........KLSI..V..GYW.G.....P...P..VTG...S.LV.L...PRGT.
Retrocopy
KILKIILMQKQSHAGQWTRFKVFVAIRDYNRHVSVEVKCSKEVATAFHR--LSSKLSITAVG*GYW\GTRSASP--TPSFVTG--SSMLVHLMLTPRGTN


Parental protein
IVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKNHTRVSVQRTQAPAVATT
IV.A.VPKKL..M...D...TSARGC.ATLGN.AKAT.DAISKT.S..TP.L..ET.FTK.PYQEFTDHL.K.HTRVS..R.QAPAV..T
Retrocopy
IVYASVPKKLPLMPSMDNSCTSARGCNATLGNSAKATCDAISKTHSCVTPNLCRETMFTKCPYQEFTDHLIKTHTRVSM*RIQAPAVVAT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide