RetrogeneDB ID:
retro_ecab_950
Organism:
Horse ( Equus_caballus )
Location:
7:21915737-21916266 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.74 %
Coverage:
65.8 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
YBX1
Parental gene aliases:
No gene alias available
Parental gene description:
Y box binding protein 1 [Source:HGNC Symbol;Acc:8014]

Genomic region (view in browser)





>retro_ecab_950
TACCCACACAGCAGGGGTGCTCCAAGCAATTACAACAGAATGACCAGAGCAGTGAGAGTG
GGAGAAAGAATGAGGGATTGGACAGTGCTCCCGAAGGCCAGGCCCAACAGTGCCAGCCCC
ACCACAGGCCACAGTGCCTACCCTACTACCTGCAGAGACTCTCTGGGCATCGACCACAAT
ATTCCAACCCTCCTGTGCAGGGAGATGGGATAGAGGGGGCTGACAACCAGGGTTCAGGAG
AGCAAGGTAGACCAGTGGGACAGAACATGTATCAGGGTTAGAGGCCACCATTCCGCAGGG
GCCTTCCTCGCCAAAGACAGCTCAGAGAGGACAGCAGTGAAGAAGATAAGGAAAACCAAG
GAGAGGAGACTCAAGGTCAGCAGCCGCCTCCACACTGGTACCGCCGCAACTTCAATTACC
GATGCAGTAGCCCAGAAAATCCTCAACCACGAGACAGCAAAGAGACAAAGCAGCAGATCC
ACCAGCTGAGAATTCGTCAGCTCCCGAGGCTGAGCAGAGCGGGGCTGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.05
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
YPRRRGPPRNY-QQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGAGEQGRPVRQNMYRGYRPRFR
YP..RG.P.NY.QQN.Q.SESG.KNEG..SAPEGQAQQ..P..R....PYY..R..G.RPQYSNPPVQG...EGADNQG.GEQGRPV.QNMY.G.RP.FR
Retrocopy
YPHSRGAPSNY/QQNDQSSESGRKNEGLDSAPEGQAQQCQPHHRPQCLPYYLQRLSGHRPQYSNPPVQGDGIEGADNQGSGEQGRPVGQNMYQG*RPPFR


Parental protein
RGPPRQRQPREDGNEEDKENQGDETQGQQPPQRRYRRNFNYRRRRPENPKPQDGKET-KAADPPAENSSAPEAEQGGAE
RG.PRQRQ.RED..EEDKENQG.ETQGQQPP...YRRNFNYR...PENP.P.D.KET.KAADPPAENSSAPEAEQ.GAE
Retrocopy
RGLPRQRQLREDSSEEDKENQGEETQGQQPPPHWYRRNFNYRCSSPENPQPRDSKET/KAADPPAENSSAPEAEQSGAE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide