RetrogeneDB ID:
retro_ecab_953
Organism:
Horse ( Equus_caballus )
Location:
7:31075994-31076607 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.9 %
Coverage:
72.6 %
Frameshifts:
1
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_953
ATGAAGAGGAAAAAGAATGTGTTCCAAGCAAGGGAATAGGACAAAACCCCAGAAAAAGAA
CTAAATGAAACAGAAATAAACAATCTACCTGACAAAGAGTTCAAACAAAAACTCATGAGG
ACACTCACTGATCTTGGGAGAAAACTGGATGAACACAGTGAGAATGTCAACAAAGAATTG
GAAAATATGAAAAAGAGCCAATTCGAAATGAATAATAGAACATTGGAAAGGAAAAATTCA
CTATAAGGACTCAATAGCAGAGTAGATGATACAGAAAAACGGATCAGTGAGCTGGACTAA
AGACAAGAGGAAATCACCCAAGATGAACAGAAAAAAGAAAAAAGAATTAAAAAAGAATGA
GAACTGTCTAAGGGAAGTCTGGGACAATAACAAGCACACTAACATTCATATTATAGGTGT
CCCAGAAGGAGGAGAGACAGACAAAGGAGCAGAGAATCTATTTGAAGAAATGATAGCTGA
AAACCTTCCTAAGCTAAGGAAGGAAACAGACATTCAAGTACAGGAGGCATAGACGGCACC
AAACAAGCTAAACCCAAAAAGACTCACACCAAGATACATTATAATTAAAATGTCCAAAAT
TAAAAATAAACAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MRRQRNMFHARVQDKTPEKELNETQRDNLPDKEFKQKGIRMLIDLGRRMDKHSENVNKELENIKKSQSEMKSTILKMKNSLEGLNSRVDDTEEWIKKLDE
M.R..N.F.AR..DKTPEKELNET...NLPDKEFKQK..R.L.DLGR..D.HSENVNKELEN.KKSQ.EM....L..KNSL.GLNSRVDDTE..I..LD.
Retrocopy
MKRKKNVFQARE*DKTPEKELNETEINNLPDKEFKQKLMRTLTDLGRKLDEHSENVNKELENMKKSQFEMNNRTLERKNSL*GLNSRVDDTEKRISELD*


Parental protein
KLEEISQ-VNQVKEKTILKNDSKIKELWDNIKHANIRIISVPGGEERHKGEENLFEEIIDENFPNLRKETDIQVQEEQRAPNKSSPKRPTPIHIIIKMSK
..EEI.Q..N.........N.....E.WDN.KH.NI.II.VP.G.E..KG.ENLFEE.I.EN.P.LRKETDIQVQE...APNK..PKR.TP..IIIKMSK
Retrocopy
RQEEITQ\MNXXXXXXXXXNENCLREVWDNNKHTNIHIIGVPEGGETDKGAENLFEEMIAENLPKLRKETDIQVQEA*TAPNKLNPKRLTPRYIIIKMSK


Parental protein
IKDKE
IK.K.
Retrocopy
IKNKQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide