RetrogeneDB ID:
retro_ecab_955
Organism:
Horse ( Equus_caballus )
Location:
7:46750616-46750885 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.33 %
Coverage:
60.14 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
SSBP1
Parental gene aliases:
No gene alias available
Parental gene description:
single-stranded DNA binding protein 1, mitochondrial [Source:HGNC Symbol;Acc:11317]

Genomic region (view in browser)





>retro_ecab_955
ATGTTTCAAAGACCTGTATTGCAGGTTCTTCACCAGTTGGTAAGACATGAGTCTGAAACA
GCTAGCAGCTCGATTCTCAGAGGATCTCTGAATCCTGTGCAGTCACTTGGACAAGTGGAT
CAGGACCCTGTCACGAGACAGGTGGGAAGGGAAAGGACCCAGTGACAATATCTTCTCTAG
GGACAATTGAAATGTGGCGATCAGGGGAAAGTGAAGCACCAGCCAATGGGTGATGGTCGG
TCAGGACAACTTGCTACAGAATTTCAGTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MFRRPVLQVLHQFVRHESEIASSLVLERSLNRVQLLGRVGQDPVMRQV-EG-KNPVTIFSLATNEMWRSGESEAYQMGDVSQKTTWHRISV
MF.RPVLQVLHQ.VRHESE.ASS..L..SLN.VQ.LG.V.QDPV.RQV.EG.K.PVTI.SL.T.EMWRSGESEA...G..S..TT..RISV
Retrocopy
MFQRPVLQVLHQLVRHESETASSSILRGSLNPVQSLGQVDQDPVTRQV\EG\KDPVTISSLGTIEMWRSGESEAPANG*WSVRTTCYRISV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide