RetrogeneDB ID:
retro_ecab_957
Organism:
Horse ( Equus_caballus )
Location:
7:56518470-56519853 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
89.59 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
4


Parental gene:
Parental gene symbol:
ODC1
Parental gene aliases:
No gene alias available
Parental gene description:
ornithine decarboxylase 1 [Source:HGNC Symbol;Acc:8109]

Genomic region (view in browser)





>retro_ecab_957
ATGAACAACTTTAGTAATGGACAGTTTGAGTGCCATTTTCTCGATGAAGGCTTTACTGCC
AGGGACATTCTGGCCCAAAAAATTAATGAAGTTTCTTCTGATGATGATAAGGATGCCTTC
TATGTTGCGGACCTGGGAGACATCCTAAAGAAACACCTGGGGTGGTTAAAAGCTTTTCCT
GGGGTCACCCCCTTCTCTGCAATCAAATGCAATGATAGTAGAACCATCGTGAAGACCTTA
ACTGCCGTTGGGACAGGGTTTGACTGTGCCGGCGAGACTGAAATACAACTGATGCACAGT
CTCGGGGTGCCTCCGGAGAGGATTATCCACGCAAATCCTTGTAAACAAGTGTCCCAGATT
AAGTATGCTGCCAATAACGGAGTCCAGATGATGACTTTTGACAGTGAAGTCGAGTAGATG
AAAGTTGCCAGGGCACATTCAAAGACAAAGTTGGTTTTGCGGATTGCTACCAATGATTCC
AAAGCAGTCTGTCGCCTCAGTGTTAAATTTGGTGCTACATTCAAAACCAGCAGGCTTCTT
TTGGAACAGGCGAAAGAGCTAAATATTGACATCATTGGTGTCAGCTTCCATGTGGGAAGT
GGCTGCACTGACCCGGAGACTTTTGTGCAGGCCATCTCTGACGCCTGCTGTGTCTTTGAC
ATGGGGGCTGAGATTGGTTTCAACATGTATCTGCTTGATATTGGTGTTGGCTTTCCTGGA
TCTGAGGATATAAAGCTTAAATTTGAAGAGGTCACCAGTGTAATCCACCCAGCACTGGAC
AAGTATTTTCTGTCAGACTTGGGAGTGAGAGTCATAGCTGAGCCAGGCAGATAGTACGTT
GCGTCAGCTTTCATGCTCGCAGTTAATATCATTGTGAAAAAACTCGTATTAAAGGAACAA
ACAGGATCTGATGATGAAGATGAGTCGAGTGAACAAACCTTTATGTATTACGTGAATGAT
GGAGTATATGGATCATTTAATTGCATCCTTTATGATCATGCACACGTGAAGCCTCTTCTG
TAAAAGAGACCCAAACCAGATGAGAAGTATTATTCATCCAGCATGTGAGGACCGAGGTGT
GACGACCTCTATCGCATTGCTGAGCGCTGTAACTTGCCCGAGATGCAGGTGGGCGATTGG
ATGCTCTTTGAAAACAGGGGTGTTTATACTGTTGCTGCTGCTTCTACTTTCAACAGATTC
CAGAGGTCAGCTATCTACTATGCCATGTCAGGGCCAACATGGCAACTGATGCAGCAAATC
CAGAACCACGACTTCCCGCCTGAAGTGGAGGAGCAGGACGTCAGCACTCTGCCTGTGTCC
TGTGCTTGGGAGAGTGGGATGAAGCGGCACCCAGCAGCCTGTGCTTTAGCCAGCATTCAT
GTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MNNFSNGEFDCHFLDEGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSRTIVKTLAAIGTGFDCASKTEIQLVQS
MNNFSNG.F.CHFLDEGFTA.DIL.QKINEVSS.DDKDAFYVADLGDILKKHL.WLKA.P.VTPF.A.KCNDSRTIVKTL.A.GTGFDCA..TEIQL..S
Retrocopy
MNNFSNGQFECHFLDEGFTARDILAQKINEVSSDDDKDAFYVADLGDILKKHLGWLKAFPGVTPFSAIKCNDSRTIVKTLTAVGTGFDCAGETEIQLMHS


Parental protein
LGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERAKELNIDVIGVSFHVGS
LGVPPERII.ANPCKQVSQIKYAANNGVQMMTFDSEVE.MKVARAH.K.KLVLRIAT.DSKAVCRLSVKFGAT.KTSRLLLE.AKELNID.IGVSFHVGS
Retrocopy
LGVPPERIIHANPCKQVSQIKYAANNGVQMMTFDSEVE*MKVARAHSKTKLVLRIATNDSKAVCRLSVKFGATFKTSRLLLEQAKELNIDIIGVSFHVGS


Parental protein
GCTDPETFVQAISDARCVFDMGAEIGFNMYLLDIGGGFPGSEDVKLKFEEVTSVINPALDKYFPSDSGVRVIAEPGRYYVASAFTLAVNIIAKKLVLKEQ
GCTDPETFVQAISDA.CVFDMGAEIGFNMYLLDIG.GFPGSED.KLKFEEVTSVI.PALDKYF.SD.GVRVIAEPGR.YVASAF.LAVNII.KKLVLKEQ
Retrocopy
GCTDPETFVQAISDACCVFDMGAEIGFNMYLLDIGVGFPGSEDIKLKFEEVTSVIHPALDKYFLSDLGVRVIAEPGR*YVASAFMLAVNIIVKKLVLKEQ


Parental protein
TGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPEMQVGDWMLFENMGAYTVAAASTFNGF
TGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHAHVKPLL.KRPKPDEKYYSSS..GP.CD.L.RI.ERCNLPEMQVGDWMLFEN.G.YTVAAASTFN.F
Retrocopy
TGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHAHVKPLL*KRPKPDEKYYSSSM*GPRCDDLYRIAERCNLPEMQVGDWMLFENRGVYTVAAASTFNRF


Parental protein
QRPTIYYVMSGPTWQLMQQIQNHDFPPEVEEQDVSTLPVSCAWESGMKRHPAACASASINV
QR..IYY.MSGPTWQLMQQIQNHDFPPEVEEQDVSTLPVSCAWESGMKRHPAACA.ASI.V
Retrocopy
QRSAIYYAMSGPTWQLMQQIQNHDFPPEVEEQDVSTLPVSCAWESGMKRHPAACALASIHV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide