RetrogeneDB ID:
retro_ecab_959
Organism:
Horse ( Equus_caballus )
Location:
7:70994681-70995065 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
61.36 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_959
ATGGCCCAGGAAAGCACTGCTGCTGCAGAGGTAATGGACGTTAGTACTACTTCCCGAGAG
GTGCTGGACACCAGCCTCGTCCACGAAGGCCTAGCACGTGGAAGCTGCTAAGCTGCCAAG
GCCTTGGCCAAGCGCCAAGCCCATGTCTGTGTCCTGAATCCAATGCGTGAGCCTGTGTCT
GCCGGGCTGGTGAAGGCCCCTGGCGCTGAACACCAGCTCAACCTAATTAAGGCTGATGAC
AACCAGAAACTAGGGGAACGGATGGGCCTCTGTAAAAGTGACAGAGAAGGAAGACTCGGA
AAGTGGCTGGTTGTGGTGGTTAAGGATGACAGCAAAGAATCTCAGGCCAAGGATGTCATT
GACGAGTACTCCAAAGGCAAGGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.13
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAEEGIAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKP
MA.E..AA..VMDV.T...EVL.T.L.H.GLARG...AAKAL.KRQAH.CVL.....EP....LV.A..AEHQ.NLIK.DDN.KLGE..GLCK.DREG..
Retrocopy
MAQESTAAAEVMDVSTTSREVLDTSLVHEGLARGSC*AAKALAKRQAHVCVL-NPMREPVSAGLVKAPGAEHQLNLIKADDNQKLGERMGLCKSDREGRL


Parental protein
RKVVGCSCVVVKDYGKESQAKDVIEEYFKCKK
.K......VVVKD..KESQAKDVI.EY.K.K.
Retrocopy
GKWL---VVVVKDDSKESQAKDVIDEYSKGKE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide