RetrogeneDB ID:
retro_ecab_96
Organism:
Horse ( Equus_caballus )
Location:
6:74501158-74501890 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
97.53 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_96
ATGGCGGTGCAAATTTCCAAGAAGAGGCAGTTTGTAGCTCACGGCATCTTCAAAGCTGAA
CTGAACGAGTTCCTCACTCGGGAGCTGGCTGAAGATGGCTACTCTGGAGTTGAGGTCCGG
GTTACACCCACCAGGACGGAAATCATCATCTTGGCCACCAGGACGCAGAATGTTCTTGGT
GAGAAGGGCCGGCGGATCCGGGAATTGACCGCTGTGGTTCAGAAGAGATTTGGCTTCCCT
GAGGGCAGTGTAGAGCTGTATGCTGAAAAGGTGGCCAAGAGGGGTCTGTGTGCCATTGCC
CAGGCAGAGTCTCTGCGCTACAAACTCCTGGGAGGCCTTGCTGTGCGGAGGGCCTGCTAT
GGTGTGCTGCGGTTCACCATGGAGAGTGGGGCCAAAGGCTGCGAGGTCGTGGTGTCTGGG
AAACTCCGAGGACAGAGGGCTAAATCCATGAAGTTTGTGGACGGCCTGATGATCCACAGT
GGGGACCCTGTCAACTACTATGTGGACACTGCTGTGTGCCATGTACTGCTTAGACAGGGT
GTGCTGGGCATCAAAGTGAAGATCATGCTGCCTTGGGACCCAAGTGGTAAGATTGGCCCT
AAGAAGCCGCTGCCTGACCACGTGAGCATCGTGGAACCCAAAGATGAGATACTGCCCACC
ACCCCCATCTCAGAACAGAAGGGTGGGAAGCCAGAGCCGCCTGCCATGCCCCAGCCAGTA
CCCATGGCATAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.86
SRP021940_placental_villous 0.18
SRP021940_synovial_membrane 0.6
SRP021940_testis 0.24

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIA
MAVQISKKR.FVA.GIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVA.RGLCAIA
Retrocopy
MAVQISKKRQFVAHGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVAKRGLCAIA


Parental protein
QAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGP
QAESLRYKLLGGLAVRRACYGVLRF.MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV.HVLLRQGVLGIKVKIMLPWDPSGKIGP
Retrocopy
QAESLRYKLLGGLAVRRACYGVLRFTMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVCHVLLRQGVLGIKVKIMLPWDPSGKIGP


Parental protein
KKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPVPTA
KKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPVP.A
Retrocopy
KKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPVPMA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide