RetrogeneDB ID:
retro_ecab_961
Organism:
Horse ( Equus_caballus )
Location:
7:74868072-74868545 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.14 %
Coverage:
98.17 %
Frameshifts:
1
Stop codons:
4


Parental gene:
Parental gene symbol:
SRSF3
Parental gene aliases:
No gene alias available
Parental gene description:
serine/arginine-rich splicing factor 3 [Source:HGNC Symbol;Acc:10785]

Genomic region (view in browser)





>retro_ecab_961
GTGCATCATGATTCCTGTCCATTGGACTGTAAGGTTTATACAGGTAATCTTGGAAACAAT
GGTAACAAGACTGAATTGGAACGAGCTTTTGTTTGTTACGGACAACTCCGAAGTGTGTGG
GTTGCTAGAAACCCTCCTGCCTTTGCTTTTGTTGAATTTTAGGATCCCCTAGACGAGGCT
GATGCTGTCTGAGAGCTGGATTAGAGAGCAATATGTGGCTGCCGAGTAAGAGTGGTACTG
TGGAATGATGAAAAAAGTCAAAATCGTAGCCCACCTCCCTCTTGGAGTCACCACCCTCAA
GACAGTGGAGGAGTCCTCCACCTAGACGCAGATCCCCAAGACAGAGAAGCCTCTCCCGTA
GCCGGAACAGGTCCCTTTAGAGAGAGAGGAGGAGAGAGAGATCACCGTCCCAGAAGAGAA
ATCACAAGCCGTCGTTATCCTTCTCTAGGTCTCATAGCTGACCTAGGTCAAAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRP
.H.DSCPLDCKVY.GNLGNNGNKTELERAF..YG.LRSVWVARNPP.FAFVEF.DP.D.ADAV.ELD.R..CGCRVRV.L.N.EK.S.NR.PPPSW...P
Retrocopy
VHHDSCPLDCKVYTGNLGNNGNKTELERAFVCYGQLRSVWVARNPPAFAFVEF*DPLDEADAV*ELD*RAICGCRVRVVLWNDEK-SQNRSPPPSWSHHP


Parental protein
RD-DYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSN
.D...R...P..RRRSPR.RS.SRSR.RSL........S.S..RNHKPS.SFSRS.S..RSN
Retrocopy
QD/QWRSPPP--RRRSPRQRSLSRSRNRSLXXXXXXXXSPSQKRNHKPSLSFSRSHS*PRSN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide