RetrogeneDB ID:
retro_ecab_963
Organism:
Horse ( Equus_caballus )
Location:
8:1961375-1961828 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
56.69 %
Coverage:
56.88 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
YBX1
Parental gene aliases:
No gene alias available
Parental gene description:
Y box binding protein 1 [Source:HGNC Symbol;Acc:8014]

Genomic region (view in browser)





>retro_ecab_963
AAGGACGCGGGATCAGGGAGTCCTCCCAATGGCCCGGCCCCTCAGTCATTTCCTGACAGC
ACACAGGCACGGTCCCCACCTCACTACATGCAGAGATCCTATGGGTGACAACTACAGTGT
GCCAGCCCTCTTGTGCAGGGAGAAGTGATGGAGGGGACTGACACCCAGGGTGCAGGAGAA
CAAGCTAGACCAGTAGACAGAAGCTGTATTGGGGTATAGACCACAGTGCCGCAGGGGCCC
TCCTCGCCAAAAGCAGCCCAGAGAGGATGGGCACGCAAATGAGGAAGATCAGGGACAGGA
GACCTACAGTAAGCAGGCACCTCAACGTCAGCACCACTGCACCTTCAACGACCAACACAG
AGGCCAAGAAATCCCTAGACCACAAGATGGCCAGGAGACGAAAGCAGCTGCCCCTTAGCT
GAGAACCACCCTCCCGGGACTGAGCAGGGTGGG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KNEGSESAPEGQAQQRRP-YRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGAGEQGRPV-RQNMY-RGYRPRFRRGPPRQRQPREDGNEEDKEN
K..GS.S.P.G.A.Q..P.....R.PP.YM.R.YG...Q...P.VQGEVMEG.D.QGAGEQ.RPV.RQ..Y..GYRP..RRGPPRQ.QPREDG.....E.
Retrocopy
KDAGSGSPPNGPAPQSFPDSTQARSPPHYMQRSYG*QLQCASPLVQGEVMEGTDTQGAGEQARPV/RQKLY/LGYRPQCRRGPPRQKQPREDGH-ANEED


Parental protein
QGDETQGQQPPQRRYRRNFNYRRRRPENPKPQDGKETKAAD-PPAENSSAPEAEQGG
QG.ET...Q.PQR.....FN...R..E.P.PQDG.ETKAA..P.AEN...P..EQGG
Retrocopy
QGQETYSKQAPQRQHHCTFNDQHRGQEIPRPQDGQETKAAA/PLAEN-HPPGTEQGG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide