RetrogeneDB ID:
retro_ecab_966
Organism:
Horse ( Equus_caballus )
Location:
8:2558955-2559601 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
56.47 %
Coverage:
82.16 %
Frameshifts:
10
Stop codons:
1


Parental gene:
Parental gene symbol:
YBX1
Parental gene aliases:
No gene alias available
Parental gene description:
Y box binding protein 1 [Source:HGNC Symbol;Acc:8014]

Genomic region (view in browser)





>retro_ecab_966
AGTGCAGGAGATGGGGAGACTGTGCAGTCTGATGCTGCTGAGGGAGAAGGGGGCAGAGGA
GCAAATGTGACAGGCCTGGTGGAGCTGCAGTGCAGACAGTAAATGTGCACCAGCCCAGGG
CCAGCATAGCCGCTGTTCACGTAGCAGGGGCCTCCACACACCCCCAGCAGAACCACCAGA
ATAGTGACAGCGGGAAAGAATGCGGGATCAGAGAGAGCTCCCGAAGGCCCGGCCCCACAG
CACCAGCCCAACCACACACAGGCCACGATCCCCACCTCACTACATGCAGAGACCCTGTGA
GTGACAACCACAGTGTTCCAGCCCTCCTGTGCAGGGAGAAGTGATGGAGGGGACTGACAC
CCAGGTGCAGGGAACAAGGCAGACCAGTAGACAGAAGCTGTATCGGGGTACAGACCACAG
TGCTGCAGAGGCCCTCCTCGCCAAAGACAGCCAGAGAGGACGGCCACGCAGATCAGGAAG
ATCAGGGACAGGAGACCTACTGTAAGCAGCCACCTCAACGTCAGCACCGCCGCACCTTCA
ACGACCAACACAGAGGCCAAGAAATCCCTAGACCACAAGATGGCCAGGAGACGAAAGCAG
CTGCCCCCCAGCTGAGAACCCCCCACCCAGGGCTGAGCAGGGTGGG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SVGDGETVEFDVVEGEKGAEAANVTG-PGGVPVQ-GSKYAADRNHYRRYPRRRG-PPRNYQQNYQNSESGEKNEGSESA-PEGQAQQRRPYRRR-RFPPY
S.GDGETV..D..EGE.G...ANVTG.PGG..VQ..SK.A.......R..R.RG.PP............G.KN.GSE.A.P........P...R.R.PP.
Retrocopy
SAGDGETVQSDAAEGE-GGRGANVTG/PGGAAVQ/DSKCAPAQGQHSRCSRSRG/PPHTPSRTTRIVTAG-KNAGSERA\PKARPHSTSPTTHRPRSPPH


Parental protein
YMRRPYGRRPQYSNPPVQGEVMEGADNQ-GAG-EQGRPV-RQNMYR-GYRPRFRRGPPRQRQP-REDGNEEDKENQGDETQGQQPPQRRYRRNFNYRRRR
YM.RP....PQ.S.PPVQGEVMEG.D.Q.GAG.EQGRPV.RQ..YR.GYRP...RGPPRQRQP.REDG...D.E.QG.ET...QPPQR..RR.FN...R.
Retrocopy
YMQRPCE*QPQCSSPPVQGEVMEGTDTQ/GAG/EQGRPV/RQKLYR/GYRPQCCRGPPRQRQP/REDGH-ADQEDQGQETYCKQPPQRQHRRTFNDQHRG


Parental protein
PENPKPQDGKETKAAD-PPAENSSAPEAEQGG
.E.P.PQDG.ETKAA..PPAEN...P.AEQGG
Retrocopy
QEIPRPQDGQETKAAA/PPAEN-PPPRAEQGG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide