RetrogeneDB ID:
retro_ecab_968
Organism:
Horse ( Equus_caballus )
Location:
8:30345592-30346161 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
61.0 %
Coverage:
52.17 %
Frameshifts:
8
Stop codons:
2


Parental gene:
Parental gene symbol:
MAP2K2
Parental gene aliases:
No gene alias available
Parental gene description:
mitogen-activated protein kinase kinase 2 [Source:HGNC Symbol;Acc:6842]

Genomic region (view in browser)





>retro_ecab_968
TCTCTGGACCAGGCATTGAAGGAAGCCAAGAGAATTCCCAAGAGATTCTGGGGAAGCTCC
ACATTGCAATTCCCTGAGGCTTGGGGTATCCCCAAGAAAAGCACACCAATCATGCACCAA
GATGTGAAATCTTCTAACAGCCTCGTCAACTGCAGAGGGGAGATCAAGCCGTGCAATTTT
GGGGTGAACGGGCAGCTTGACTCCACAGCCAACCCCGTTGTAGGAACTCGATCCTACACA
TCTCTGAGCAGTTGCAAGACACTCACTGATCGGTGCAGTCAGGCATCGGGAGCACGGCCT
GTCCCTGGAGAAGCTGTCCGTGGGAAGGTACCCCATCCCTCTCCTGATGCCAAGGAGCTG
AGGCAATATCTGGCTGGGCCATGGTCGGGGGGGGTGGAAGGAGAGCCTCCTAGCATCTTC
CCAAGGCAAAGAGCACCTGGACACCCCGCAGCGGCCACAGATGGATAGCTGGCCAGCTCT
GGCCATCTTGCAACTGCCGGATGGTATTGTGAAGGAGCTTGCTTTCCAAGCTGGCCACCA
GCAGCTTCGCTCAGGACCTCAAGGAGTTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SLDQVLKEAKRIP-EEILGKVSIAVLRGLAYLREKH-QIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMS-PERLQGTHYSVQSDI
SLDQ.LKEAKRIP..EILGK..IA...GL.Y..EKH..IMH.DVK.SN.LVN.RGEIK.C.FGV.GQL.DS.AN..VGTRSY.S..E.LQ.TH.SVQS.I
Retrocopy
SLDQALKEAKRIP/QEILGKLHIAIP*GLGYPQEKH\PIMHQDVKSSNSLVNCRGEIKPCNFGVNGQL-DSTANPVVGTRSYTS/SEQLQDTH*SVQSGI


Parental protein
WSM-GLSLVELSVGRYPI-PPPDAKELEAIFGRPVVDGAEDEPPSTSPRPRPPGRAI-SGH-GMDSRPAMAIFELLDYIVNEPP-HKLPHGAFTQDFQEF
.S..GLSL..LSVGRYPI.P.PDAKEL......P.....E.EPPS..PR.R.PG....SGH..MDS.PA.AI..L.D.IV.E....KL....F.QD..EF
Retrocopy
GST/GLSLEKLSVGRYPI/PSPDAKELRQYLAGPWXXXXEGEPPSIFPRQRAPGHPA/SGH/QMDSWPALAILQLPDGIVKELA\SKLATSSFAQDLKEF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide