RetrogeneDB ID:
retro_ecab_969
Organism:
Horse ( Equus_caballus )
Location:
8:33962909-33963177 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
52.69 %
Coverage:
50.28 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
BNIP3
Parental gene aliases:
No gene alias available
Parental gene description:
BCL2/adenovirus E1B 19kDa interacting protein 3 [Source:HGNC Symbol;Acc:1084]

Genomic region (view in browser)





>retro_ecab_969
GGGCCCTGGGCGGGACTGCCCTCCAGCAGGAGTGGGAATAGAGAAGTGCTCCAGTCTCAA
TCTCTATCTATAATCATGACGTGGAGCAAACACTGCCGGATGCCCAGCACGAATCTAGAT
GATGTCTCTCAGAGAGCACCCACTGCGATGACCCCTCCCTCACAGACACCACGGGATACT
GACAGAGTTTCTGAAATAGACATCTCGTAGCACCGGAGGAAGAAACAGATCTCAGCCTGA
AGAAGATTATATTGAGACAAGAAACAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GSWVELHFSNNGNGS-SVPASVSIYNGEMEKILLDAQHESGRSSSKSSHCD-SPPRSQTPQDTNRAFETD-THSIGEKNSSQSEEDYIERRKE
G.W..L..S..GN...S.P.S.SIYN...E..L.DAQHES....S.S.HCD..PP.SQTP.DT.R..E.D...S.G..N.SQ.EEDYIE.R..
Retrocopy
GPWAGLPSSRSGNRE/SAPVSISIYNHDVEQTLPDAQHESR*CLSESTHCD\TPP-SQTPRDTDRVSEID\SRSTGGRNRSQPEEDYIETRNK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide