RetrogeneDB ID:
retro_ecab_97
Organism:
Horse ( Equus_caballus )
Location:
27:22708127-22709048 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.14 %
Coverage:
90.67 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_97
ATGGACCAGCAACTGAAGAAAAGGGCAAAGACACAAGACGGGAAAGGCCTGGATAGAAGA
GCCATCGTCGCTGGGGATAAGCCACAGCGAGCCCAGGCCAGCCCAGCCCGGCAGGAATCT
CTCGACATGACGTGGGCCTTAGGTGGTGAAGATGTGTACTGTGAGACTTGCCATCAGCTT
GTTGGAGAGGATTCCTTCTGCGACTGTTACATAGAATGCATAATAAGAGGTGAGTTTTCT
GAACCCATCCTGGAAGAAGACTTACTTCTTAAGTCCTTTGACTGCCTGACAGAAGGATCA
GAACAAGACCTTTCTCAACAGCTTCTTACCGCCAGCTCTCTTCTCGAATGTTCTCTGGAA
TACGTGAAAAAAGGGGCAAAACAAGACCTTCCCCAAGAGACTGTTGGCGAGAATTCACTT
CTTGGGTATCCTGAGTACATGACAGGCAAGAGGCTTCCTCCTGGAGGAATATCCAGCGTT
GACTTACCAGATCCCCAACAGCTCTCAGAATCTGCTAGAAAGAAGCCAGGAAAAAATCAA
GAATGTGATGCTCCAGAAAAAATTGTTTGTCCTCAGAGCGGATGCACAAAAAAGTTGAAG
AATAAGGCTTCCCTGAGAAAACATCTCCTCGTTCATGGGCCCCGAGATCACGTATGTGCA
GAATGTGGGAAAGCGTTCAATGAGAGCACAAAACTAAAAAGGCATTTCCTGGTTCATACT
GGAGAGAAGCCATTTCAGTGCACTTTCGAAGGGTGTGGAAAACGCTTTTCCCTGGACTTC
AACTTGCGTACACATGTACGCATCCACACCGGGGAGAAACGTTTTATGTGTCCCTTCGAA
GGCTGTCACAAGAGGTTTATTCAGTCAAACAACATGAAAGTTCACATCTTAACTCATGCA
AAGACAAAAGGGAATCAATGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.07
SRP021940_placental_villous 5.5
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EQIIGENSPPDYSEYMTGKKLPPGGIPGIDLSDPKQLAEFARMKPRKIKEDDAPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSK
....GENS...Y.EYMTGK.LPPGGI...DL.DP.QL.E.AR.KP.K..E.DAP..I.CP..GCTK........RKHL..HGPR.HVCAECGKAF.ES.K
Retrocopy
QETVGENSLLGYPEYMTGKRLPPGGISSVDLPDPQQLSESARKKPGKNQECDAPEKIVCPQSGCTKKLKNKASLRKHLLVHGPRDHVCAECGKAFNESTK


Parental protein
LKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ
LKRH.LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG.....CPF.GC.K.F.QS.N.K.HILTHAK.K.NQ
Retrocopy
LKRHFLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGEKRFMCPFEGCHKRFIQSNNMKVHILTHAKTKGNQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide