RetrogeneDB ID:
retro_ecab_970
Organism:
Horse ( Equus_caballus )
Location:
8:36374103-36374504 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.65 %
Coverage:
68.18 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
RAB2A
Parental gene aliases:
No gene alias available
Parental gene description:
RAB2A, member RAS oncogene family [Source:HGNC Symbol;Acc:9763]

Genomic region (view in browser)





>retro_ecab_970
GGTAGAGGAAAAGTTTTCCTCCCCAACAATATTACAAGCAGAAATACATTTAACCACTTG
ACAACCTGGTTAAAAGATGCCCCCCAGCATTCAAATTCCAACATGGTCATTATGCTTATG
GGAAATAAAAGTGATTTAGAATCTAGGAGAGAAGTAAAAAAAACAAGGTAGAGTCTTTGC
ATGGTAACACAGACTTATTTCTTCATGGAAACTTGTGCTAAGACTGCTCCCAATATAGAA
GTGGCATTTATTAATACAGCAAAAGAAATTTATGGAAAAGTCCAAGAAGTCTTTGACATT
AATAACAAGGAAAATGGCATTAAAATGGGCCATCAGCATGCTGCTACTAATGCCACACAT
GCAGGCTGTCAGGCAGGACAGCAGGCCTGGGAGGTTGCTGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFD
G.....L...IT.R.TFNHLTTWL.DA.QHSNSNMVIML.GNKSDLESRRE................FMET.AKTA.N.E.AFINTAKEIY.K.QE.VFD
Retrocopy
GRGKVFLPNNITSRNTFNHLTTWLKDAPQHSNSNMVIMLMGNKSDLESRREXXXXR*SLCMVTQTYFFMETCAKTAPNIEVAFINTAKEIYGKVQE-VFD


Parental protein
INNEANGIKIGPQHAATNATHAGNQGGQQAG-GGCC
INN..NGIK.G.QHAATNATHAG.Q.GQQA..GGCC
Retrocopy
INNKENGIKMGHQHAATNATHAGCQAGQQAW/GGCC


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide