RetrogeneDB ID:
retro_ecab_973
Organism:
Horse ( Equus_caballus )
Location:
8:57763310-57763759 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.55 %
Coverage:
93.33 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_973
ATTCCACCCAAGTTTGACCCCAAAAATATTAAAGTTGTGTACCTGAGGTGAATCTGTGGG
GAAGTCAGTGCCATGTCTGTCCTTGGCCCCTTGGGCTTATCTCCCAAACAGGTTGGTGAT
GACATTGCCAAGGCTGCAGGTGACTGGAAGGGTCTAAGGATTGCAGTGGAACTGACCGTT
CAGAACAGACAGGCCCAGACTGAGGTGGCACCTCTGCCTCTGCCCTGATCATCACAGTCC
TCAAGGAACCACCCAGAGACAGAAGGAAGCAGAAAAACATTAAGCTCAGTGGAAATACCA
CTTTTGATGACACTATCAACATTGCCCAACAGATGTGGCACTGATGGTTAGCCAGAGAAC
TCTCTGGAATCATTAAAGAGATCCTGGGGACTGCACAGTCTGTGGGCTGCAGTGTCAATG
GCTGCCACCTTCACAACATCATAGATGAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVP-SASALIIKALKEPPRDRKKQKNIK
.PPKFDP..IKVVYLR...GEV.A.S......GPLGLSPK.VGDDIAKA.GDWKGLRI.V.LT.QNRQAQ.EV.P.SASALII..LKEPPRDR.KQKNIK
Retrocopy
IPPKFDPKNIKVVYLR*ICGEVSAMSV----LGPLGLSPKQVGDDIAKAAGDWKGLRIAVELTVQNRQAQTEVAP/SASALIITVLKEPPRDRRKQKNIK


Parental protein
HSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDVIDD
.SGN.TFD...NIA.QM.H..LARELSG.IKEILGTAQSVGC.V.G.H.H..IDD
Retrocopy
LSGNTTFDDTINIAQQMWH*WLARELSGIIKEILGTAQSVGCSVNGCHLHNIIDD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide