RetrogeneDB ID:
retro_ecab_974
Organism:
Horse ( Equus_caballus )
Location:
8:63066450-63067198 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
61.42 %
Coverage:
84.19 %
Frameshifts:
4
Stop codons:
7


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_974
AGAAAAAGGAATGCATTCCAAATAAGGGAACAGGGCAAAACCCCAGAAAAAGAACTAAAT
GAAATAGAGATAAACAATCTACCTGAAAAAGAGTACAAGCTAAGATTCATAATGATGCTC
ACTGATCTTGGGAGAAGAATGGATGAGTTCAGTTAAAACTTCTACAAATAATTGGAAAAT
ATAAAAAAGAACCCACCAGAAATGAAGAATACCATACTGGAAATGAAAAATTCACTAGGA
GGACTCAATAGCAGAATAGATGATACAGAAGAATAGATCAGTGAGCTTGATGAAAGATTA
GAGGAAATCACCTGAGATGAACAGATAAAAGAAAAAAGAATTAAAAAGAATAAGAACAGT
CTAAAGGACCTCTGGGACAACATCAAGAGCACTAACATCCATATTATAGGTGTTCCAGAA
GGAGGAGAAAGAGAAAATGCCAGAGAATATATTTGAAGAAATAATAGCTGAAAACTTTCC
TAATCAAAGGAAGGAAACACCATCCAGGTACAGGAAGCACAGAGAGCACCAAACAAGATA
ATCCCAAAGAGGTCCATACTAAGACAAATTATAATTAAAACATCAAAAATTAAAGATAAG
GAGAGAAAAAGCCTAAAAGCCGCAGGAGAAGCTAAGAAGTTACATAAAAAAGAAACATCA
TAAAGCTATCAGCTGACTTCTCAGCAGAAATGTAATGGGCTAGAAGGGAGTAGCACAATA
TTTTCAAAGCACCGAAAGGAAAAAACCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RQRSTFQVKEQDKTPEKELNETEISNLPDKVFKQK-VKLLTDLGRRMDEHSENFNKELENIKKQ-SEMKNTIMEMKNSLEGLNSRVDDTEERISKLDERL
R.R..FQ..EQ.KTPEKELNE.EI.NLP.K..K......LTDLGRRMDE.S.NF.K.LENIKK...EMKNTI.EMKNSL.GLNSR.DDTEE.IS.LDERL
Retrocopy
RKRNAFQIREQGKTPEKELNEIEINNLPEKEYKLRFIMMLTDLGRRMDEFS*NFYK*LENIKKNPPEMKNTILEMKNSLGGLNSRIDDTEE*ISELDERL


Parental protein
EEVTQAEQIKEK--MKKTDSLRDLWDNIKCTKIRITGVPE-EEGDKGAE-IYLIKIAENFPKLQKEA-DFQVQEAQNAPNRINPKRHTPRHIINKISNPG
EE.T..EQIKEK...K...SL.DLWDNIK.T.I.I.GVPE.EE..K..E.I....IAENFP...KE....QVQEAQ.APN.I.PKR...R.II.K.S...
Retrocopy
EEIT*DEQIKEKRIKKNKNSLKDLWDNIKSTNIHIIGVPE\EEKEKMPENIFEEIIAENFPNQRKET/TIQVQEAQRAPNKIIPKRSILRQIIIKTSKIK


Parental protein
RNKERILKAARERQ-QVTYKGNSIRLSADLSAETLQARRKWHSIFKV-LNRKKP
......LKAA.E....VT.K.N.I.LSAD.SAE...ARR..H.IFK....RKKP
Retrocopy
DKERKSLKAAGEAK/EVT*KRNIIKLSADFSAEM*WARRE*HNIFKA/TERKKP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide