RetrogeneDB ID:
retro_ecab_975
Organism:
Horse ( Equus_caballus )
Location:
8:63406411-63406627 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.06 %
Coverage:
91.14 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_975
CAAAGTTACTTTTTGGACAAATATGACCACGAGGCATTCGAGTACCAGCATGCCATGTTA
CCCGAGGATACAGCCAAGCTGGTCTTTAAAATTCATTTAATGTCAGAATCTGAATGGAGG
AATTTTAGCATTCAGTAGAGTCAGGGTTAGGGCCATTGTATGATTCATGAGCCAGAACCT
CACATCTTGCTGTACCAGTATCCCCTGCCCAGGGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIHEPEPHILLFRRPLPKK
Q.Y..DKYD.E.FEY.H.MLP.D.AKLV.K.HLMSESEWRN...Q.SQG..H.MIHEPEPHILL...PLP..
Retrocopy
QSYFLDKYDHEAFEYQHAMLPEDTAKLVFKIHLMSESEWRNFSIQ*SQG*GHCMIHEPEPHILLYQYPLPRE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide