RetrogeneDB ID:
retro_ecab_977
Organism:
Horse ( Equus_caballus )
Location:
8:69142356-69142645 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.84 %
Coverage:
54.05 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
RPL17
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L17 [Source:HGNC Symbol;Acc:10307]

Genomic region (view in browser)





>retro_ecab_977
AAAACGGTTCACTATTCACTTGACCCAGAAAACCCTGCAAAATCATGCAAATCAAGAGCT
TCGCATCTCCATGTTCTCGTTAAGAACATCTGTGAAACTGCCCAGACCATCAAAGGTACA
CATATCTGAAAAGCCACCAAGTCTCTGAAAGATGACACTTTGCAGAAGCAATGCATGCCA
CTCCATCTAACAATGGTGGAGTGCCCAGGCCAAAGAGTGGGGCTGGACACAGGGCCAGGG
GCCCCGAAAGAGTACTGAGTTTTTGCCTTATGTGCTTGAAAATGCAGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KMVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFR-RYNGGVGRCAQAKQWGWTQGRWPKK-SAEFLLHMLKN
K.V.YSLDPENP.KSCKSR.S.L.V..KN..ETAQ.IKG.HI.KATK.LKD.TL.KQC.P.....NGGV.R....K.......R.P...S.EFL...L.N
Retrocopy
KTVHYSLDPENPAKSCKSRASHLHVLVKNICETAQTIKGTHI*KATKSLKDDTLQKQCMPLH/SNNGGVPR---PKSGAGHRARGPER/STEFLPYVLEN


Parental protein
AE
AE
Retrocopy
AE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide