RetrogeneDB ID:
retro_ecab_978
Organism:
Horse ( Equus_caballus )
Location:
8:69781609-69782244 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.12 %
Coverage:
92.98 %
Frameshifts:
6
Stop codons:
1


Parental gene:
Parental gene symbol:
NIPSNAP3B
Parental gene aliases:
No gene alias available
Parental gene description:
nipsnap homolog 3B (C. elegans) [Source:HGNC Symbol;Acc:23641]

Genomic region (view in browser)





>retro_ecab_978
GGCCCCAGACAATATGATGGAACATTCTATGAATTTCATACTATTGCCTTAAACCCTCAA
AGATAGATGAGTTTCTGGAAAATATTAAGAAAAACCTTCATCTTTGAACAGCTCCCTCTG
AATTGGTTGGATTATGGAGTGCAAAATTTGTAGGCAGAATGAATAAAGTGTTCCATGTTT
GGAAGTATGATAGTTTTGCTCATCAAGGTGAAGTTTGGAAAGGCTTGGCCAAAAATAAGG
CATGCCAAGAACAACTTCTCATTCCAAATTTGGCTCTCATTGATAAACAAGAGTTTGAGA
TTACCTATGTGGTACCATGGTGCAAAATAGAAAAACGTCCAAAAGGAGTCTATGAGCTTT
CATCTGGTTATTTTCCAGATGAAACCTGGTGGGCCAGCTCTGTGGGGTGATGCATTTAAA
AGGACAGTTGATGCCCATGTCAATATAGGCTGCACAAAACTGTTGGCGTTGTCCACCCAG
AATATGGAGCACCCAGCAGAGATCATGTTCTTTGGTGAATGAGAGTGCAGATAGTCATGC
AGCTGGAGACATCAATTTCATGAAGATCTTAACTTGCGGTGGCTGTTTGGGAAAACCTCA
ACTACCAAATGTCACATAAAAATATGCTTCTGATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GPRQYDGTFYEFRT-YCLKPSKMNEYMEKIKKNIHLRTAHSELVGFWSVEFGGRMNKVFHIWKYDNFAHRTEVRKALAKDREWQEQFLIPSLALIDKQEF
GPRQYDGTFYEF.T.YCLKPSK..E..E.IKKN.HL.TA.SELVG.WS..F.GRMNKVFH.WKYD.FAH..EV.K.LAK....QEQ.LIP.LALIDKQEF
Retrocopy
GPRQYDGTFYEFHT/YCLKPSKIDEFLENIKKNLHL*TAPSELVGLWSAKFVGRMNKVFHVWKYDSFAHQGEVWKGLAKNKACQEQLLIPNLALIDKQEF


Parental protein
EIAYLVPWSKLEKPP-KEGV-YELATFQMKPGGPALWGEPFKRAVNAHVNRGYSKL-VGVFHTEYGTLNRVHVLW-WNESADSRAAG-RHESHEDPR-VV
EI.Y.VPW.K.EK.P.KE.....L..FQMKPGGPALWG..FKR.V.AHVN.G..KL.VGV.H.EYG...R.HVLW..NESADS.AAG.RH..HED.....
Retrocopy
EITYVVPWCKIEKRP\KESMSFHLVIFQMKPGGPALWGDAFKRTVDAHVNIGCTKL/VGVVHPEYGAPSRDHVLW/VNESADSHAAG/RHQFHEDLN/LA


Parental protein
AAVRESVNYLVSQQNMLLI
.AV.E..NY..S..NMLLI
Retrocopy
VAVWENLNYQMSHKNMLLI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide