RetrogeneDB ID:
retro_ecab_979
Organism:
Horse ( Equus_caballus )
Location:
8:79442038-79443017 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
82.57 %
Coverage:
85.79 %
Frameshifts:
1
Stop codons:
4


Parental gene:
Parental gene symbol:
GLUL
Parental gene aliases:
No gene alias available
Parental gene description:
glutamate-ammonia ligase [Source:HGNC Symbol;Acc:4341]

Genomic region (view in browser)





>retro_ecab_979
GACAGGGAGCCCAAGTGTGTAGAAGAGCTGCCTGAGTGGAATTTTGATGGCTCTAGGACT
TTTCAGTCTGAAGGCTCCAATAGTGACATGTATCTCGTCCCTGCTGCTGTGTTTTGGGAC
CCTTTCCACAAGGACCCCAACAAGCTGTTGTTCTGTGAAGTCTTCAAGTACAACTGAAAG
TCTACAGAGACCAACTTAAGGCACACCTGTAAACGGATAATGGACATGGAGAGCCACCCG
TCCCCCCCGGTTTGGAACGGAGCAGGAATAAATGCTCATGGGCATAGATGGGCAACCTTC
TGGTTGGGCTTCCAATGGCTTCCCTGGGTCCCAATGTCCATACTACTGTGGTGTGGGAGC
AGACAAAGCTTATGGCAGGGATAGTGTGGAGGTTTACTACCGGGCCTGCTTGTACGCCAG
CGTCAAGATTGCAGGGAGAAATGCCGAGGTCATGCCTGCCCAGTGGGAATTCCAGATAGG
ACCCTGTGAAGGAATCGACATGGGAGATCATCTCTAGGTGGCCCATTTCATCTTGCATTG
TGTGTGTCAAGACTTTGGAGTGATAGTAACCTTTGATCCTAAGCCCATTCCTGGGAAGTA
GAAGGGTGCAGGCTGCCACACCAACTTCAGCACCAAGGCCACGCGAGAGGAGAATGGTCT
GAAGTACACTGGGGAGGCCACTGAGAAACTGAGCAAGAAGCATCAGTACCACATCCGAGC
CTACGATCCCAAGGGGGGCTTGGACAATGCCCGGTGCCTGACTGGATTCCACGAAACCTC
CAACATCAATGACATTTCTGCTGGCGTGGCCAACCATAGTGCTAGCATCCACACTCCCCA
GGCCGTCAGCCAGGAAAAGATGGGTTACTTTGAAGACTGTTGCCCCTCTGCCAACTGTGA
CCCCTTTTCGGTGACAGAAGCCCTCATCCACATGTGTTTTCTCAACGAAACTGGTGATGA
GCCCTTCCAATACAAAAAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.12
SRP021940_cerebellum 0.15
SRP021940_embryo 0.07
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.77

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DSEPKCVEELPEWNFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRIMDMVSN-QHPWFGMEQEYTLMGTDGHP
D.EPKCVEELPEWNFDGS.TFQSEGSNSDMYLVPAA.F.DPF.KDPNKL.FCEVFKYN.K..ETNLRHTCKRIMDM.S....P.FG.EQE..LMG.DG.P
Retrocopy
DREPKCVEELPEWNFDGSRTFQSEGSNSDMYLVPAAVFWDPFHKDPNKLLFCEVFKYN*KSTETNLRHTCKRIMDMESH\RPPRFGTEQE*MLMGIDGQP


Parental protein
FGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIVTFDPKPIPGN
.GW.SNGFPG.Q.PYYCGVGADKAYGRD.VE..YRACLYA.VKIAG.NAEVMPAQWEFQIGPCEGIDMGDHL.VA.FILH.VC.DFGVIVTFDPKPIPG.
Retrocopy
SGWASNGFPGSQCPYYCGVGADKAYGRDSVEVYYRACLYASVKIAGRNAEVMPAQWEFQIGPCEGIDMGDHL*VAHFILHCVCQDFGVIVTFDPKPIPGK


Parental protein
WNGAGCHTNFSTKAMREECGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANC
..GAGCHTNFSTKA.REE.GLKY..EA.EKLSK.HQYHIRAYDPKGGLDNAR.LTGFHETSNIND.SAGVAN..ASI..P..V.QEK.GYFED..PSANC
Retrocopy
*KGAGCHTNFSTKATREENGLKYTGEATEKLSKKHQYHIRAYDPKGGLDNARCLTGFHETSNINDISAGVANHSASIHTPQAVSQEKMGYFEDCCPSANC


Parental protein
DPFSVTEALIRTCLLNETGDEPFQYKN
DPFSVTEALI..C.LNETGDEPFQYKN
Retrocopy
DPFSVTEALIHMCFLNETGDEPFQYKN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide