RetrogeneDB ID:
retro_ecab_98
Organism:
Horse ( Equus_caballus )
Location:
21:15166313-15167444 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
92.25 %
Coverage:
99.73 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
ACTB
Parental gene aliases:
No gene alias available
Parental gene description:
Actin, cytoplasmic 1, N-terminally processed [Source:UniProtKB/TrEMBL;Acc:F7A5E3]

Genomic region (view in browser)





>retro_ecab_98
ATGACTGATGAGGAGCTGTCTGCCTTGGTGGTGGACAATGGGTCAGGGATGTGCAAGGCA
GGCTTTGGTGGTGACGATGCCCCCCGAGCTGTGTTCCCCTCCATGGTGGGGCGTCCCCGG
CACCAGGGGGTCATGGTAGGCATGGGCCAGAAGGACTGCTACGTGGGAGACGAGGCCCAG
AGCAAGAGAGGCATACTGACCCTGAAGTATCCCATTGAACATGGAGTGGTCACCAACTGG
GACGATATGGAGAAGATCTGGCACCACACTTTCTACAATGAGCTCCGCGTGGCACCAGAT
GAGCATCCCATCCTCCTCACCGAGGCACCCCTCAACCCCAAGATCAACCGGGAAAAGATG
ACCCAGATCATGTTCGAGGCCTTCAATACACCTGCCATGTATGTGGCTATCCAGGCTGTA
CTGTCCCTCTATGCCTCTGGAAGGACCACAGGCATCGTGATGGATTCTGGGGATGGGGTC
ACGCACACTGTACCCATCTATGAAGGTTATGCCCTGCCCCACGCCATTCTACGTTTAGAT
CTGGCTGGCAGAGACCTCACTGATTACCTCATGAAGATCCTGACAGAACGAGGCTACAAC
TTCACCACCACAGCTGAGCGGGAGATTGTTCGCGATGTCAAAGAGAAGCTGTGCTATGTG
GCCCTGGACTTTGAGCAAGAGATGGTCAGTGCTGCCACATCCTCCTCACTTGAAAGAAGC
TATGAGCTCCCTGATGGGCAGGTGATCACGATTGGGAATGAACGCTTTCGATGCCCTGAA
GCCATTTTCCAGCCTTCTTTTCTGGGCATTGAGTCCAACGGGATCCACGAGATGACCTTC
AACTCAATCATGAAGTGTGACGTGGATATTCGCAAGGATCTATATGCCAACACGGTGCTA
TCTGGAGGTAGCACTATGTACCCAGGCATTGCCGACCGGATGCAGAAGGAAATCGTAACC
CTGGCACCAGGCTCCATGAAAATCAAGATCATAGCTCCCCCAGAGCGGAAGTATTCCGTC
TGGATAGGAGGCTCCATTCTGGCCAGCCTGTCCACATTCCAGCAGATGTGGATCAGTAAG
CAGGAATATGATGAGGCTGGTCCTCCCATCGTTCATAGAAAATGTTTCTGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.1
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH
.EE..ALV.DNGSGMCKAGF.GDDAPRAVFPS.VGRPRHQGVMVGMGQKD.YVGDEAQSKRGILTLKYPIEHG.VTNWDDMEKIWHHTFYNELRVAP.EH
Retrocopy
DEELSALVVDNGSGMCKAGFGGDDAPRAVFPSMVGRPRHQGVMVGMGQKDCYVGDEAQSKRGILTLKYPIEHGVVTNWDDMEKIWHHTFYNELRVAPDEH


Parental protein
PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT
P.LLTEAPLNPK.NREKMTQIMFE.FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY.FT
Retrocopy
PILLTEAPLNPKINREKMTQIMFEAFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYNFT


Parental protein
TTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG
TTAEREIVRD.KEKLCYVALDFEQEM..AA.SSSLE.SYELPDGQVITIGNERFRCPEA.FQPSFLG.ES.GIHE.TFNSIMKCDVDIRKDLYANTVLSG
Retrocopy
TTAEREIVRDVKEKLCYVALDFEQEMVSAATSSSLERSYELPDGQVITIGNERFRCPEAIFQPSFLGIESNGIHEMTFNSIMKCDVDIRKDLYANTVLSG


Parental protein
GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
G.TMYPGIADRMQKEI..LAP..MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE.GP.IVHRKCF
Retrocopy
GSTMYPGIADRMQKEIVTLAPGSMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPPIVHRKCF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide