RetrogeneDB ID:
retro_ecab_980
Organism:
Horse ( Equus_caballus )
Location:
8:80798639-80799414 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.56 %
Coverage:
54.6 %
Frameshifts:
5
Stop codons:
4


Parental gene:
Parental gene symbol:
YARS2
Parental gene aliases:
No gene alias available
Parental gene description:
tyrosyl-tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:24249]

Genomic region (view in browser)





>retro_ecab_980
CAGACACGGCTGAAGACTCCTAGAGACATGAGCGCCAAGTTCTAATACCAGGTGCCCCAG
GCTTGTGACTTCCATCATCAGTTCCAGAGTATGGATGGTGGGTCCAGCTGGTGGACCTGA
TCAGCTGGGCAACATCATGTCCAGATACAAGTCAATCCACAAGTTGACTAGAGAAGACCA
TTTGGCATCCCTGTTGCTCTAATTACAAGCACAGCTGGAGCAGAACTGGGAAAGTCAGTG
GCAGTGCTGTCTGGATAAACAGAGATGAGACATCTCCATTTGAATTGTACCATTTCTTTG
TCAGGGAGAAAGATGATTTGGAAGAAAGGTAGCCGAAGCTCCTCACTTTTCTGCCGCTTC
CAGAGCTTGACCACGTAATGTGGCTGCATGTCAAAGAGCCACAAAAGCAGGGTCCTCGGA
AACGACTGGCTGCAGAAGTAACAAAGCTTGTACATGGACAGGAAGGGCTGGCTTCTGCTA
AAATGTGTAAACAAGCACTTTGTCATCGTTGTACAGACACACTGGAGGTCATGTCTGATC
AAGAGATGAAAGAGTGTTTAAAGAAGCTTCATTTTCTGAATTAGTTCTTGACCCTGGAGC
AAGCGGCTGAGATACATGCCACAAAGCAAATGCCATTCCAGATGGTCCCCGAAGGTATCA
GGTGATAACACAGGGCAGAGTCAGTATAAGTCACAGATGAGTAACAAATCCTGAGAGTGT
TTTAGTGGTTGGACAACATATTCTTAAGAATGGACTGTCAGTAGAGGAAGATGGG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QTRLKSPEGMSLAEFLYQVLQAYDFYYLFQ-RYGCRVQL-GGSDQLGNIMSGYEFIHKLTGED-VFGITVPLITSTTGAKLGKS-AGNAVWLNRDKTSPF
QTRLK.P..MS.A.F.YQV.QA.DF...FQ..YG..VQL.GG.DQLGNIMS.Y..IHKLT.ED..FGI.V.LITST.GA.LGKS..G.AVW.NRD.TSPF
Retrocopy
QTRLKTPRDMS-AKF*YQVPQACDFHHQFQ/EYGWWVQL/GGPDQLGNIMSRYKSIHKLTRED/PFGIPVALITSTAGAELGKS/SGSAVWINRDETSPF


Parental protein
ELYQFFVRQQDDSVERYLKLFTFLPLPEIDHIMQQHVKEPEKWGPQKRLAAEVTKLVHGQEGLDSAKRCTQALYHSSIDALEVMSDQELKE-LFKEASFS
ELY.FFVR..DD..ER..KL.TFLPLPE.DH.M..HVKEP.K.GP.KRLAAEVTKLVHGQEGL.SAK.C.QAL.H...D.LEVMSDQE.KE..FKEASFS
Retrocopy
ELYHFFVREKDDLEER*PKLLTFLPLPELDHVMWLHVKEPQKQGPRKRLAAEVTKLVHGQEGLASAKMCKQALCHRCTDTLEVMSDQEMKE/VFKEASFS


Parental protein
ELVLDPGTSVLDTCRKANAIPDGPRGYRMITEGGVSINHRQVTNPESVLVVGQHILKNGLSLLKIG
ELVLDPG.S..DTC.KANAIPDGPR.Y..IT.G.VSI.HR.VTNPESVLVVGQHILKNGLS....G
Retrocopy
ELVLDPGASG*DTCHKANAIPDGPRRYQVITQGRVSISHR*VTNPESVLVVGQHILKNGLSVEEDG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide