RetrogeneDB ID:
retro_ecab_981
Organism:
Horse ( Equus_caballus )
Location:
8:83178973-83179964 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
62.76 %
Coverage:
68.45 %
Frameshifts:
8
Stop codons:
6
Parental gene:
Parental gene symbol:
KPNA7
Parental gene aliases:
No gene alias available
Parental gene description:
karyopherin alpha 7 (importin alpha 8) [Source:HGNC Symbol;Acc:21839]
Genomic region (view in browser)
>retro_ecab_981
AGGCTGAGGAAATTTCAGTACTGAGGCAAAGAAGCATCTACGAGGCAGCAACAGCAGATG
GCAATCAGCCTACAGCTCCAGAAAGCCAAGAAAGACGAGCAGGCTGTAAAGAGAAGGAAC
ATGACCAATCTCTCACCTGACTCAGTTTCAGGAAAGCTCACCAAATTGGTCAGCTTCCCC
CTGCATGAAATAATCAATGGTGTGACTCCTCGGACCCAGAGCTATGTGTCCAGGCCACTC
AGGCAGCCAGGAAAATGCTGTCTCAAGAAAGAAGCCCTCCTCTAAAATAGATTGTTGAAG
CAAGGCTCGTTCTCATGCTGCTGGAGCTCCTGAAGTCATGGCTTCACCACTGCTTGCGGT
TGAGGCAGCCTGGGCTCTGACCAGCACAGCTTCATTGACTTTGGAGCAGACACCAGCTGT
TGTGGACGGAGTGCCATCCAGCCCTTGAGTGAGCTTCTGTCTTCCCCTGGTGTGACTGTT
TGTGAACAGGTAATGTGGGTTCTTGGTAACAGAGCAGGTGACAGCTGAGAATTCAGAGAC
ATCGTCCTCTTGAGCAATGCTGTCCCACATCTGCTGGCCCTGGTTTTTCATCAACCATAC
CCATCCCATTTCTGTAGAACATCATGTGGACCTTGTCCACACTGGAGCAAAACAACAACC
GGTACTCTTGTGAAAAAGTGGTCAAGTAAATGTTGTTACTCCTCTTCCACCTCCCACAGC
GTCGTGGCAATGAGGTTCCCTGGGACACCTGCTGGGCCATGTCCTACCTCATGATGGCTG
CAATGAGTGCATCTGCCAAACGGTTGACAAGGGGGTCCTGTCTGGCTGCTAGAGCTCATG
ACCAGTTTGAGGCTCAATGTCTTGACCCCCTCTCTCCACACTGTGGAAACTTCGTCATTG
TAACGGATCACCAGAACTAAGTGGCCGTTGACACAGGCGGCTGAGCATGCTGCCCCAGCT
CCTGATGCACCGCAAGTTCTCCATCCAGAGG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.06 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.1 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.29 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
