RetrogeneDB ID:
retro_ecab_982
Organism:
Horse ( Equus_caballus )
Location:
8:1692716-1693327 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
56.56 %
Coverage:
78.44 %
Frameshifts:
10
Stop codons:
1


Parental gene:
Parental gene symbol:
YBX1
Parental gene aliases:
No gene alias available
Parental gene description:
Y box binding protein 1 [Source:HGNC Symbol;Acc:8014]

Genomic region (view in browser)





>retro_ecab_982
AGTGCAGGAGATGAGGAGACTGTGCAGTCTGATGCAACTGAGGGAGAAGGGGCAGAGGCA
GCAGATGTGACAGGCCTGGCACAGCTGCAGTGCAGACAGAAAATGTGCAGAAGCCTGGGG
CCAGCACAGCCGCTGTTCATGTCGCAGAGGCCTCCACACAGCCCCCAGCAGAACCACCAG
AATAGTGAGAGCGGGAATGAATGCGGGATCAGAGCGTGCTCCGAAAGCCAGACCCCACGC
CGGCCTGATCGCATGCAGCCACGGTCCCCACCCCACTATATGCGGAGACCCTACAGGTGA
CCACAGTTTTCCAGCCTCCTGTGCAGGGAGAAGTGATGGAGGGGACTGACACCCAGGTGC
AGGGAACAAGGCAGACCAGTAGACAGAAGCTGTATCGGGGTGTAGACCACAGTGCTGCAG
GGAGCCTCCTTGGCAAAGACAGCCAGAGAGGACGGCCATGCAGATCAGGAAGATCAGGGA
CAGGAGACCTACTGTAAGCAGCCACCTCAACGTCAGCACCGCCGCACCTTCAATGACCAA
CAGAGAGGCCAAGAAACCCCTAGACCACAAGATGACCGGGAGACGAAAGCAGCTGCTTCC
CAGCTGAGAAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SVGDGETVEFDVVEGEKGAEAANVTG-PGGVPVQGS-KYAADRNHYRRYPRRRG-PPRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYM
S.GD.ETV..D..EGE.GAEAA.VTG.PG...VQ...K.A.......R...RRG.PP...QQN.QNSESG....G.....E.Q...R......R.PP.YM
Retrocopy
SAGDEETVQSDATEGE-GAEAADVTG/PGTAAVQTE/KCAEAWGQHSRCSCRRG/PPHSPQQNHQNSESGNEC-GIRACSESQTPRRPDRMQPRSPPHYM


Parental protein
RRPYGRRPQYSN-PPVQGEVMEGADNQ-GAG-EQGRPV-RQNMYRGY-RPRFRRGPPRQRQP-REDGNEEDKENQGDETQGQQPPQRRYRRNFNYRRRRP
RRPY.R.PQ.S..PPVQGEVMEG.D.Q.GAG.EQGRPV.RQ..YRG..RP...R.PP.QRQP.REDG...D.E.QG.ET...QPPQR..RR.FN...R..
Retrocopy
RRPY-R*PQFSS/PPVQGEVMEGTDTQ/GAG/EQGRPV/RQKLYRGV/RPQCCREPPWQRQP/REDGH-ADQEDQGQETYCKQPPQRQHRRTFNDQQRGQ


Parental protein
ENPKPQDGKETKAADP-PAEN
E.P.PQD..ETKAA...PAEN
Retrocopy
ETPRPQDDRETKAAAS/PAEN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide