RetrogeneDB ID:
retro_ecab_983
Organism:
Horse ( Equus_caballus )
Location:
8:1735450-1736113 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
54.62 %
Coverage:
86.62 %
Frameshifts:
5
Stop codons:
1


Parental gene:
Parental gene symbol:
YBX1
Parental gene aliases:
No gene alias available
Parental gene description:
Y box binding protein 1 [Source:HGNC Symbol;Acc:8014]

Genomic region (view in browser)





>retro_ecab_983
ACATCACCACAGAGGAGGAAGCCCAGCGAGGACCTTCACAGTGCAGGAGATGGGGAGACT
GTGCAGTCTGATGCTGCTGAGGGAGAAGGGGGCAGAGGCAGCAAACATGACAGGCCTGGC
AGAGCTGCAGTGCAGACAGTAAATGTGCAGCAGCCCGGGGCCAGCACAGCCGCTGTTCAT
GTCACAGGGGCCCCCACACCCCCCAGCAGAACCACCAGAAGAGTGAGAATGGGAAAGAAC
AAGGGATCAGAGAGTGCTCCTGAAGGCCAGGCCCCACGCAGGCCACAGTCCCCACCTTGC
TACATGCAGAGACCCTACAGGTGACAACCACAGTGTTCCAGCCCTCCTGTGCAGCGAGAA
GTGATGGAGGGGACTGACACCCAGGGTGCAGGAGAACAAGGCAGACCAGTAGACAGAAGC
TGTATCAGGATATAGACCGTGCTGCAGGGACCCTCCTCACCAAAGACAGCCCAGAGAGGA
CGGCCATGCAGATCAGGAAGATCAGGGACAGGAGACCTACTGTAAGCAGCCACCTCAACG
TCAGCACCGCCGCACCTTCAATGACCAACACAGAGGCCAAGAAATCCCTAGACTACAAGA
TGGCCAGGAGACAAAAGCAGCTGCCCCCCAGCTGAGAACCCCCATCCCAGGGCTGAGCAG
GGC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQ-GSKYAADRNHYRRYPRRRGPPRNYQQNYQNSESGEKNEG-SESAPEGQAQQRR
T......P...L.S.GDGETV..D..EGE.G........PG...VQ..SK.AA.R....R....RG.P...QQN.Q.SE.G.K..G.SESAPEGQA....
Retrocopy
TSPQRRKPSEDLHSAGDGETVQSDAAEGE-GGRGSKHDRPGRAAVQ/DSKCAAARGQHSRCSCHRG-PHTPQQNHQKSENG-KEQG\SESAPEGQA----


Parental protein
PYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGAGEQGRPV-RQNMYR-GYRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQQPPQRRYRRN
P.R....P.Y..R.PY...PQ.S.PPVQ.EVMEG.D.QGAGEQGRPV.RQ..Y..GYRP...R.PP.QRQPREDG...D.E.QG.ET...QPPQR..RR.
Retrocopy
PRRPQSPPCYMQR-PYR*QPQCSSPPVQREVMEGTDTQGAGEQGRPV/RQKLYQ/GYRP-CCRDPPHQRQPREDGH-ADQEDQGQETYCKQPPQRQHRRT


Parental protein
FNYRRRRPENPKPQDGKETKAAD-PPAENSSAPEAEQG
FN...R..E.P..QDG.ETKAA..PPAEN...P.AEQG
Retrocopy
FNDQHRGQEIPRLQDGQETKAAA/PPAENPH-PRAEQG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide