RetrogeneDB ID:
retro_ecab_984
Organism:
Horse ( Equus_caballus )
Location:
8:2476326-2476889 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
55.45 %
Coverage:
71.38 %
Frameshifts:
9
Stop codons:
3


Parental gene:
Parental gene symbol:
YBX1
Parental gene aliases:
No gene alias available
Parental gene description:
Y box binding protein 1 [Source:HGNC Symbol;Acc:8014]

Genomic region (view in browser)





>retro_ecab_984
GAGAACGGGGCGGAGGCAGCGAATGTCACAGGCCTGGCAGAGCTGCAGTGCACACAGTAA
ACGTGCAGCAGCCCGGGGCCAGCATAGCTGCTGTTCACTTCACAGGGGCCTCCACACCCC
CCAGCAGATCCACCAGAATAGTGTGAGCGGGAAGAATGGTGGATCAGAGAATGCTCCCGA
AGGCCAGGCCCCACAGTGACTTCCCGACCGCACACAGGCCACGGTCCCCACCTCACTACA
TGTAGAGACCCTATGGGTGACAACCACAGTGTTCCAGCCCTCCTGTGCAGCGAGAAGTGA
TGGAGGGGACTGACACCCAGGTGCAGGGAACAAGGCAGACCAGTAGACAGAAGCTGTATC
GGGGTATAGACCACAGTGCCGCAGGGGCCTCCTCACCAAAGACAGTCAGAGAGGACGGCC
AAGCATATCAGGAAGATCGAGGACAGGAGACCTACTATAAGCAGCCACCTTAACGTCAGC
ACCGCCACACCTTCAACGACCAACACAGGGGCCAAGAAATCCCTAGACCACAAGATGGCC
AGGAGACGAAAGCAGCTGCACCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EKGAEAANVTG-PGGVPVQG-SKYAADRNHYRRYPRRRGPPRNYQQNYQNSESGEKNEGSESA-PEGQAQQRRPYRRR-RFPPYYMRRPYGRRPQYSNPP
E.GAEAANVTG.PG...V...SK.AA.R.........RG.....QQ..QNS.SG.KN.GSE.A.P........P...R.R.PP.YM.RPYG..PQ.S.PP
Retrocopy
ENGAEAANVTG/PGRAAVHT/SKRAAARGQHSCCSLHRGL-HTPQQIHQNSVSG-KNGGSENA\PKARPHSDFPTAHRPRSPPHYM*RPYG*QPQCSSPP


Parental protein
VQGEVMEGADNQ-GAG-EQGRPV-RQNMYR-GYRPRFRR-GPPRQRQP-REDGNEEDKENQGDETQGQQPPQRRYRRNFNYRRRRPENPKPQDGKETKAA
VQ.EVMEG.D.Q.GAG.EQGRPV.RQ..YR.GYRP..RR.GPP.QRQ..REDG.....E..G.ET...QPP.R..R..FN...R..E.P.PQDG.ETKAA
Retrocopy
VQREVMEGTDTQ/GAG/EQGRPV/RQKLYR/GYRPQCRR/GPPHQRQS/REDG-QAYQEDRGQETYYKQPP*RQHRHTFNDQHRGQEIPRPQDGQETKAA


Parental protein
DP
.P
Retrocopy
AP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide