RetrogeneDB ID:
retro_ecab_989
Organism:
Horse ( Equus_caballus )
Location:
8:33531841-33532222 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
78.74 %
Coverage:
66.15 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
SEC11C
Parental gene aliases:
No gene alias available
Parental gene description:
SEC11 homolog C (S. cerevisiae) [Source:HGNC Symbol;Acc:23400]

Genomic region (view in browser)





>retro_ecab_989
AGTGGCAGTACAGAGCCAGCCTTTCACAAGATAGACCTTCTGTTCCTAAGAAATTTCTGG
GAAGACCCTCTGAGAGCTGGTGAAATCATTGTTTTTAAAGTTGAAGGATGAGACATTCCA
ATAGTTCACAGAGTAATCAAAGTTCATGAAAAAGATAATGGAGATACCAAATTTCTGACT
AAAGGAGATAATAATGCAGTTGATGACAGAGGCTTATACAAAGAAGGCCAGAACTGGCTT
GAAAAGAAGGTCGTGGTGGGAAGAGTCAGAGGGTCTTTACTATCTGTATGTCTGGTCACC
ATAATAATGCGTGACTATACAAGATTCAAGTATGCTCTTGTGGCTGCAATTGGTACATGT
CTGTTACTAAAACATGAATCC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGDIKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVT
SGS.EPAFH..DLLFL.NF.EDP.RAGEI.VFKVEG.DIPIVHRVIKVHEKDNGD.KFLTKGDNN.VDDRGLYKEGQNWLEKK.VVGR.RG.L..V..VT
Retrocopy
SGSTEPAFHKIDLLFLRNFWEDPLRAGEIIVFKVEG*DIPIVHRVIKVHEKDNGDTKFLTKGDNNAVDDRGLYKEGQNWLEKKVVVGRVRGSLLSVCLVT


Parental protein
IIMNDYPKFKYALLAVMGAYVLLKRES
IIM.DY..FKYAL.A..G...LLK.ES
Retrocopy
IIMRDYTRFKYALVAAIGTCLLLKHES


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide