RetrogeneDB ID:
retro_ecab_990
Organism:
Horse ( Equus_caballus )
Location:
8:37009018-37009830 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
60.36 %
Coverage:
98.18 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_990
AATGAAACAGAAATAAGTGACCTACCTGACAAAGAGTTCAAACAAAAACTCCTAAGGATG
CTCACAGATATTGGGAGAAGACTGGATGAACACAGTGAGCTCATCAACAAGGAACTGGAA
AATATAAAAAAAAAAAACCAATCAGAAATGAAGACTACAATACTGGAAATGAAAAATTCA
CTAGAGGGACTCAATAGCTGAGTAGAGGATGCAGAAGAATGGATCAGCGAGCTAGATGAA
AGACTAGAGGAAATCACCCAAGCTGAACAGAAAAAAGAAAAAAGAATTACAGTGAGAACA
ATCTAAGGGAACTCTGGAACAATATCAAGCACATTAACATTCAGAGTATAGGTGTCCCAG
AAGGAGAAGACAGAGACAAAGGGGCAGAAAATTTATTTGAAGAAATAATAGATGAAAATT
TTCCTAAGCTAAGGAAGGAAACAGACATCCAAGTACAGGAAGCACAGAGAGCTCCAAACA
AGATAAGCCCAAAGAGGCCCACACCAAGACACATTATAAATAAAAGGTCCAAAATTAAAG
ATAAAGAGGAATCCTAAAAGTGGCAAGAGAAAGGCAACAATTGACATACAAAGGAAAGCC
CATAAGGCTATCAGTGTACTTCTCAGTTGAAACCGTACAGGTGAGAAGAGAATGGCATGA
CATATTTAAAGTGCTAAAAGGAAAAAAACCTACAGCCAAGAATACTCTATCCATCAAGGG
TGTCATTCAGAATGGAAGGAGAAATAAAGAGCTTCCCAGACAAACAAAAATTAAAAGAGT
TTACCACCAAGAAACCAGTTCTACAAGAAATG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NEKEINNVTDEEYKLTVIRVLTNLGRRMDELSENFKKELENKKRTNQK--KTTILEIKNSLEGLNGRVDDTEEWISELDERLEEITQASQIKETRIIKNT
NE.EI....D.E.K....R.LT..GRR.DE.SE...KELEN.....Q...KTTILE.KNSLEGLN..V.D.EEWISELDERLEEITQA.Q.....I...T
Retrocopy
NETEISDLPDKEFKQKLLRMLTDIGRRLDEHSELINKELENXXXXXQSEMKTTILEMKNSLEGLNS*VEDAEEWISELDERLEEITQAEQXXXXXITVRT


Parental protein
-NMVKELWDNIKHNNIRLVGVPEGAERDKGAENLFEEVIAENFPNLRKETDWKTKKANRSPNFTNVKRPTPRHIVVKLAKVNDKEK-ILRAARQ-NKITY
.N...ELW.NIKH.NI...GVPEG..RDKGAENLFEE.I.ENFP.LRKETD.....A.R.PN....KRPTPRHI..K..K..DKE..IL..AR.....TY
Retrocopy
/NL-RELWNNIKHINIQSIGVPEGEDRDKGAENLFEEIIDENFPKLRKETDIQVQEAQRAPNKISPKRPTPRHIINKRSKIKDKEE/ILKVARERQQLTY


Parental protein
KGTSIRLSENFSADTLQARREWNDIFRTL-KDKNLQPRILYAVKISFKYDGEIKTFQDKQKLREFIATRPPLQEM
KG..IRLS..FS..T.Q.RREW.DIF..L.K.KNLQPRILY....SF...GEIK.F.DKQKL.EF....P.LQEM
Retrocopy
KGKPIRLSVYFSVETVQVRREWHDIFKVL\KEKNLQPRILYPSRVSFRMEGEIKSFPDKQKLKEFTTKKPVLQEM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide