RetrogeneDB ID:
retro_ecab_991
Organism:
Horse ( Equus_caballus )
Location:
8:38123361-38123959 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
87.0 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0
Parental gene:
Parental gene symbol:
CHMP1B
Parental gene aliases:
No gene alias available
Parental gene description:
charged multivesicular body protein 1B [Source:HGNC Symbol;Acc:24287]
Genomic region (view in browser)
>retro_ecab_991
ATGTCCAACATGGAGAAACACCTGTTCAAACCTGAAGTTCGCGGCCAAAGAACTGAGCAG
GAGTGCCAAAAAATGCGACAAGGAGGAAAAGGCCGAAAAGGCCAAAATTAAAAAGGCCAT
TCAGAAGGGCAACATGGAAGTTGCGAGGATTCACGCCGAAAATGCCATTCGCCAGAAGAA
CCAGGCGGTGAATTTCTTGAGAATGAGTGCGCGGGTTGATGCTGTGGCTGCCAGAGTCCA
GACGGCGGTGACGATGGGCAAGGTGACCAAGTCGATGGCCGGTGTGGTTAAGTCGATGGA
TGCGACGCTGAAGACCATGAATCTGGAGAAGATCTCTGCCTTAATGGACAAATTCGAGCA
CCAGTTTGAGACGCTGGATGTCCAGACGCAGCAAATGGAAGACACGATGAGCAGCACGAC
GACGCTGACCACTCCCCAGAACCAAGTGGATATGCTGCTCCAGGAAATGGCAGACGAGGC
CGGCCTAGACCTCAACATGGAGCTGCCGCAGGGGCAGACCGGCTCCGTGGCTACGAGCGT
GGCTTCGGCCGAGCAGGATGAACTATCCCAGAGACTGGCCCGCCTGCGGGATCAAGTG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 16.03 |
| SRP021940_cerebellum | 20.61 |
| SRP021940_embryo | 24.24 |
| SRP021940_placental_villous | 25.49 |
| SRP021940_synovial_membrane | 15.24 |
| SRP021940_testis | 10.56 |
Parental protein coverage
Changes in the retrocopy sequence
