RetrogeneDB ID:
retro_ecab_993
Organism:
Horse ( Equus_caballus )
Location:
8:40900171-40900877 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
58.09 %
Coverage:
86.76 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_993
CAACAAATAGTAAATATAAGAAAGAAACAATCAGAGCTAAAGAATACAATAATGGAAATG
AAAAATACACTAGGGGGAATCAACAGCAGATTAGATGATAAAGTACGAATCAGCAGTCTG
GAAGACAAAGTAGTGGAAATCACCAATCAGAATATCAAAAAGAAAATAGAATTTTAAAAA
ATGAGGATACTTTAAGGGACCTCTGGGACAACATCAAGCATAATAACATTCTCATTATTG
GTGTCCCAGAAGGAGAAGAGAGAGAGAAAGGGGCGGAAAATTTATTTGAAGAAATAATGG
CTGAAAACTTCTCTAACTTAGGGAAGGAAACAGACATCCAGATCCAGGAGAGTTCCAGAC
AAGATGAACCCAAAGAGATTCACACTAAGATATATTATAATTAAATTGGCAAAAGTTAAA
GATAAAGAGAGAATCTTAAAGTCAGTAAGAGAAAAACGAGTCACATACAAAGGAACCTCC
CTAAGACTATAAGTTAATTTTTCAGCAGAAACTTTGCAGGCAAGAAGGGAGTGTCATGAT
ATATTTAAAGTGCTGAAGGGAAAAAAACTTACAACCAAGAATACTCTGCCCAACAAGGTT
ATCATTCAGGATTGAAAGAGACATAAAGAGTTTCCCAGACAAGCAAAAACTAAAGGAGTT
CATCACCACTAAACTGGCCTTACAAGAAATGTTAAAGGGTTTTCTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.81
SRP021940_cerebellum 0.0
SRP021940_embryo 0.34
SRP021940_placental_villous 0.27
SRP021940_synovial_membrane 0.94
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KELENIKKNQSKNKHRLKQKTTHQLGKNICKDSIAQERTNKLDKRLEEIT-QADQIKEKRIKKNEDGLRDLWNNIKHTNIHIIDVPEGEERDKGAENLFG
....NI.K.QS..K...........G.N...D.....R...L.....EIT.Q....KE.RI.KNED.LRDLW.NIKH.NI.II.VPEGEER.KGAENLF.
Retrocopy
QQIVNIRKKQSELKNTIMEMKNTLGGINSRLDD--KVRISSLEDKVVEIT/QSEYQKENRILKNEDTLRDLWDNIKHNNILIIGVPEGEEREKGAENLFE


Parental protein
EIIAENFPNLR-RKYPGEAQRAPNKINPKRPTPRHIIIKMSKSKDKERILNALRERQQVTYKGNPIRLSANFSAETLETRREWHDILKVLKG-KNLQPRI
EI.AENF.NL..RK......R.P.K.NPKR.T.R.IIIK..K.KDKERIL...RE...VTYKG...RL..NFSAETL..RRE.HDI.KVLKG.KNLQPRI
Retrocopy
EIMAENFSNLG\RKQTSRSRRVPDKMNPKRFTLRYIIIKLAKVKDKERILKSVREKR-VTYKGTSLRL*VNFSAETLQARRECHDIFKVLKG\KNLQPRI


Parental protein
LYSARLSF-MEGEIE-FPDKQNLEEFITKKPALQEMLNGLI
L...RLSF..E..I..FPDKQ.L.EFIT.K.ALQEML.G..
Retrocopy
LCPTRLSFRIERDIKSFPDKQKLKEFITTKLALQEMLKGFL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide