RetrogeneDB ID:
retro_ecab_996
Organism:
Horse ( Equus_caballus )
Location:
8:46352534-46353412 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
66.1 %
Coverage:
99.31 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_996
AGACAGAGGAATGAGTTCCATATAAGGGAACAGGACAAATCCTCAGAAAAAGAACTAAAT
GAAATAGAGATAAACAATCTACCTGACAAATAGTACCAACTAATAGTCATAAGGATGCTT
ACTGATCTTGGGAGAAGAATGGATGAACTCAGTGAGAACTTCAACAAAGAATTTGAAAGT
ACAAGAAAGAACCAATCAGAAATGAAGAATACAATAATGGAAACGAAAAACTCACTAGAG
GGACTCAATACCAGAGTAGATGATACAGAAGAACAGATCAGAGAGCTGGATGAAAGAGTA
GAGAAAATCTCCCAAACTAAACAGTAAAAAGAATTTTAAAAAATGAGGACAGTCTAAGGG
ACCTCTGGGACAAAAACAAGCACACTAACATCCATATTATAGGTGTCTCAGAAGGAGCAG
AGAGAGACAAAGAGGCAGAGAATCTATTTGAAGAAATAATAGCTGAAAACTTTCCTAACC
TAAGGAAGGAAACAGATATCCAGGCACAGGAAGTACAGAGAGCATGAAACAAGATAAACC
CAAAGAGGCCCACCCCAAGACACGTTATAAGTAAAATGTCAACAATTAAAGATAAAGAGA
GAATCTTCAAAGCTACAAGAGAAAGGCAACAAGAGTCATACAAAGGAAACCCCATAAGGC
TATCAGCTGACTTCTCAGCAGAAACCTTACAGGCCAAAAGGGAGTGGCATGATATATTTA
AAGTGCTGAAAGGAAAAAACCTGCAGCCAAGAATACTCTACCTGGCAAAATTATCATTCA
GAATGGAAGGAGAGATAAAGATCTTCTTGGACAAGCAGAAACTAAAGCTGCTGATCACCA
AGAAACCAGCCTTCCAGGAAAGGCTAAAGGGACGTATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RQRSTFQVKEQDKTPEKELNETEISNLPDKVFKQKV-KLLTDLGRRMDEHSENFNKELENIKK-QSEMKNTIMEMKNSLEGLNSRVDDTEERISKLDERL
RQR..F...EQDK..EKELNE.EI.NLPDK.....V...LTDLGRRMDE.SENFNKE.E...K.QSEMKNTIME.KNSLEGLN.RVDDTEE.I..LDER.
Retrocopy
RQRNEFHIREQDKSSEKELNEIEINNLPDK*YQLIVIRMLTDLGRRMDELSENFNKEFESTRKNQSEMKNTIMETKNSLEGLNTRVDDTEEQIRELDERV


Parental protein
EEVTQAEQ-IKEKMKKTDSLRDLWDNIKCTKIRITGVPE-EEGDKGAE-IYLIKIAENFPKLQKEADFQVQEAQNAPNRINPKRHTPRHIINKISNPGRN
E...Q..Q..K...K..DSLRDLWD..K.T.I.I.GV.E..E.DK.AE......IAENFP.L.KE.D.Q.QE.Q.A.N.INPKR.TPRH.I.K.S.....
Retrocopy
EKISQTKQ/VKRILKNEDSLRDLWDKNKHTNIHIIGVSEGAERDKEAENLFEEIIAENFPNLRKETDIQAQEVQRA*NKINPKRPTPRHVISKMSTI-KD


Parental protein
KERILKAARERQQVTYKGNSIRLSADLSAETLQARRKWHSIFKVLNRKK-PPRILYLARSSFIMEGEIKCFPDKQKLKEFITKKPALQEMLKGLI
KERI.KA.RERQQ..YKGN.IRLSAD.SAETLQA.R.WH.IFKVL..K...PRILYLA..SF.MEGEIK.F.DKQKLK..ITKKPA.QE.LKG.I
Retrocopy
KERIFKATRERQQESYKGNPIRLSADFSAETLQAKREWHDIFKVLKGKNLQPRILYLAKLSFRMEGEIKIFLDKQKLKLLITKKPAFQERLKGRI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide