RetrogeneDB ID:
retro_ecab_998
Organism:
Horse ( Equus_caballus )
Location:
8:57016740-57017457 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.97 %
Coverage:
97.57 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
RPL7L1
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L7-like 1 [Source:HGNC Symbol;Acc:21370]

Genomic region (view in browser)





>retro_ecab_998
AAAAACAGAAAGATCCCTTTGGTTCCAGAAAATCTCCCGAAAAAGAGGAAAGTTTATCAG
GCCCTCAAAGCCACCCAGGCACTTTTGGAAAAGCAGCAGCAGCAGAGGAAAGGAAAAGAA
CTCCGGTTTAAGCAACTGGGATGGTTCCTACATGATTCCTGGTGGCAAGAACGTGGCAGG
GTGTACCTTAGACAACCAGAAGTGAAACCTCATGGCTTGGAAGTGCCAAATGAACATTCC
TTGGCCTTTGTTGTATGCATCTAAAGAATTAATCGGGTGAATTTATTGGTGCAAAGGACC
ATAAAAAAGGTTCACCTGAAGAAGACTTTCAGTGGTGTCTTTGTCAAAGTGATCCCCCGA
GCCACAAAAATACTGCGTATAGTGGAAGCTTATGTGACCTGGGGGTTTCCATGTCTGAAC
TCTGTCCAGGAACCCATCTTGAAACGTGGACAAGCCAGGGTCAAGAAGAAAACCATGCCT
CTGACAGACAACACAGTGACTGAGGAGCACCTGGGGAAGCTCAGTGTTATTTGCTTGGAA
GACCTCATTCATGAAACTGCCTTCCCGGGCAAGAATTTCCAGGTGATGTCGGGGTTCTTG
CCCACTTTCCACCTCTCAGTGACCTATCATGTTACCAAGAATAGAGTGGGCTTCCTCAAG
GAGGTGGGCTCACGTGGTTATCGTGGTGAATGCATCAATTAGCTCATCTGGCAGCTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QRKKIPLVPENLLKKRKAYQALKATQAKQALLEKRKQ-KKGKELKFKRLEWFLHDSWRQKRDRVRLRRLEVKPHALEVPDEHSLAFVVRIQRINGVSLLV
...KIPLVPENL.KKRK.YQALKAT...QALLEK..Q..KGKEL.FK.L.WFLHDSW.Q.R.RV.LR..EVKPH.LEVP.EHSLAFVV.I.RIN.V.LLV
Retrocopy
KNRKIPLVPENLPKKRKVYQALKAT---QALLEKQQQQRKGKELRFKQLGWFLHDSWWQERGRVYLRQPEVKPHGLEVPNEHSLAFVVCI*RINRVNLLV


Parental protein
QSTIAKLRLKKIFSGVFVRVTPHTMKMLRTVEPYVTWGFPNLKSVRELILKRGQARVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQMIS
Q.TI.K..LKK.FSGVFV.V.P...K.LR.VE.YVTWGFP.L.SV.E.ILKRGQARVK.KT.PLTDNTV.EEHLGK..VICLEDLIHE.AFPGK.FQ..S
Retrocopy
QRTIKKVHLKKTFSGVFVKVIPRATKILRIVEAYVTWGFPCLNSVQEPILKRGQARVKKKTMPLTDNTVTEEHLGKLSVICLEDLIHETAFPGKNFQVMS


Parental protein
GFLRPFQLSVARHATKNRVGFLKEVGSPGYRGERINQLIRQL
GFL..F.LSV..H.TKNRVGFLKEVGS.GYRGE.IN.LI.QL
Retrocopy
GFLPTFHLSVTYHVTKNRVGFLKEVGSRGYRGECIN*LIWQL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide