RetrogeneDB ID:
retro_mputfur_1003
Organism:
Location:
GL896992.1:3649557-3649993 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
53.02 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
4


Parental gene:
Parental gene symbol:
Rpl26
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]

Genomic region (view in browser)





>retro_mputfur_1003
ATGAAATTTAATTCCTTGTGACCTAGGGCTGCAGCAAAACCCACTAACACTGCTTTAGGT
CCGTCTTGCATATGCTCAAGAAGATCATGTCTTTCAGCTCTCCAAGCAGTTGTGGCAGAA
GGACAAAGGACAAAGTCTGCTCTATGCCTGTTCACAAAGATGATGAGGTCCAGGTGGTTC
AGGGACACTACAACAATCCTGAAGGTGGCATGTTAGTCCAGGCCTAGACAAAGGATACAT
CATCTACATCAAATAGATGAAGCCTAAGAAGGCCAACGGCATAACTATTCACGTGGGCAT
TAACCTGAGCAGGGTGGTTATCATCAGGCCAAAACTGAACAAAGAGAAAAAAATTCTTGA
GTGCAGAGCCAAATCTTGACAAATTGGAAAAGGGAAAGGCAAATATAAAGAAGAACTTAC
TGAGCAAACGCAGGAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MKFNPF-VTSDRSKNRKRHFNAPSHIRRKIMS--SPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQV-YRKKYVIYIERVQREKANGTTVH
MKFN...VT...SK.....F....H...KIMS..SP.S...R.K..V.SMP..KDDEVQVV.GHY.....G..VQ....K.Y.IYI......KANG.T.H
Retrocopy
MKFNSL/VT*GCSKTH*HCFRSVLHMLKKIMSFSSPSSCGRRTKDKVCSMPVHKDDEVQVVQGHYNNPEGGMLVQA/LDKGYIIYIK*MKPKKANGITIH


Parental protein
VGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETIEKMQE
VGI..S.VVI.R.KL.K..KKILE..AKS.Q.GK.KGKYKEE..E..Q.
Retrocopy
VGINLSRVVIIRPKLNKE-KKILECRAKS*QIGKGKGKYKEELTEQTQD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide