RetrogeneDB ID:
retro_mputfur_1004
Organism:
Location:
GL896992.1:4484253-4484877 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
93.75 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL7
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L7 [Source:HGNC Symbol;Acc:10363]

Genomic region (view in browser)





>retro_mputfur_1004
ATGCTTCGAAAGGCAAGGAGGAAGCTTATCTATGAGAAAGCCAAGCATTACCACAAGGAG
TACAGACAGATGTACCGGACCAAGATGAGGATGGCGAGGATGGCGAGAAAAGCTGGCAAC
TTCTACGTACCTGCAGAACCCAAGTTGGCGTTTGTCATCAGGATCAGAGGCATCAATGGT
GTGAGCCCAAAGGTTCAAAAGGTATTGCAGCTCCTTCGCCTTCGTCAAATCTTTAATGGC
ACCTTTGTTAAGCTCAACAAGGCTTCAGTTAACATGTTAAGGATTGTGGAACCATATATA
GCATGGGGGTACCCTAACCTGAAGTCAGTGAATGAATTAATCTACAAGCGTGGTTATGGC
AAAATCAACAAGAAGCGAATTGCCCTGACAGATAACACATTGATTGCCCGATCTCTTGGT
AAATATGGCATCATCTGCATGGAGGATCTGATTCATGAGATCTATACTGTTGGAAAACGT
TTCAAAGAGGCAAACAACTTTTTATGGCCCTTCAAATTATACTCTCCACGAGGAGGGATG
AAGAAAAAGACCACCCATTTTGTGAAAGGTGTAGATGCTGGCAACAGAGAAGACCAGATC
AATAGGCTTATTCGAAGAATGAAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYI
MLRKARRKLIYEKAKHYHKEYRQMYRT.........KAGNFYVPAEPKLAFVIRIRGINGVSPKV.KVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYI
Retrocopy
MLRKARRKLIYEKAKHYHKEYRQMYRTKXXXXXXXXKAGNFYVPAEPKLAFVIRIRGINGVSPKVQKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYI


Parental protein
AWGYPNLKSVNELIYKRGYGKINKKRIALTDNTLIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQI
AWGYPNLKSVNELIYKRGYGKINKKRIALTDNTLIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKL.SPRGGMKKKTTHFV.G.DAGNREDQI
Retrocopy
AWGYPNLKSVNELIYKRGYGKINKKRIALTDNTLIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLYSPRGGMKKKTTHFVKGVDAGNREDQI


Parental protein
NRLIRRMN
NRLIRRMN
Retrocopy
NRLIRRMN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide