RetrogeneDB ID:
retro_mputfur_1007
Organism:
Location:
GL896992.1:3563604-3564124 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.89 %
Coverage:
100.0 %
Frameshifts:
4
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1007
CTGAAGGCCTGGAGCACAGGGCAAAAGTACAAAGTGGTGGGGTGCTGCCTGCTCCACCCA
AATGCCGCACTCCTCCTCCCCATCGAACGGGAATCTTTGCACCTCCTCATGTTGTCGCCA
AGTCCTGCTTCTGGTACTTTGTGTCTCAGCTGAAGAATATGAAGTCTTCAGGGGAAATTG
TGTACTGTGGACAGATATGCCAGAAGTCCCTCTTGCAGGCAAAGAAGCTCATCTGGCTGC
GCTATGACTCCCTCAGGGCACCCACGCATGGACCGGGGGCGCCCGGAACGGCCCACTGCA
GGGGCCGTCAGGCAGTGCTACCCAAACTTGGATGTCCTGCACCGCACCCGGGGCGCACTC
CATCCAGATCCGGAAAGTGGAGGACTTTCCAGCCAGCAAGGGCCGCATAGCAGCAGTCAA
GAGGTTCCACGACTCCAAGATCAAGTTTCCGGGGCCCCACTGAATCCTGCACGGCCAGCA
CCAGTCATGTTTCACCACCAAGAGTCCCAACACCTTCTTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MKASGTLREYKVVGRCL-PTPKCRTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSR-SGTH-NMYREY
.KA..T...YKVVG.CL...PKCRTPP..R..IFAP.HVVAKS.FWYFVSQLK.MK.SSGEIVYCGQ...KS.L..K...IWLRYDS...GTH..M.R..
Retrocopy
LKAWSTGQKYKVVGCCL/APPKCRTPPPHRTGIFAPPHVVAKSCFWYFVSQLKNMK-SSGEIVYCGQICQKSLLQAKKL-IWLRYDSL/QGTH/RMDRGR


Parental protein
RDLTTAGAVTQCYRDMGARHRAR-AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF
....TAGAV.QCY......HR.R.AHSIQI.KVE...ASK.R..AVK.FHDSKIKFP.PH..L..QH...FTTK.PNTFF
Retrocopy
PERPTAGAVRQCYPNLDVLHRTR\AHSIQIRKVEDFPASKGRIAAVKRFHDSKIKFPGPH*ILHGQHQSCFTTKSPNTFF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide