RetrogeneDB ID:
retro_mputfur_1008
Organism:
Location:
GL896992.1:5540549-5540964 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.64 %
Coverage:
75.68 %
Frameshifts:
4
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1008
ACACTCAAAACTGCACCGGTCATCAAGGGCATGTACATCCCCAAAGCCACCAAGTATCTG
AAGGAGTCACTTTTAGAAGCAATGCAGGCCATTCCATCATCGTAACAGTGGAGCTGGTAG
GTGTGCCCAGGGCCAAACGGTGGGCTGGACAAAGGACCAGTGGCCTCAAAAGAGTGCTGA
ATTTTTGCTGCACCGGCTTAAAAATGCAGCGAGTAATGCTGAACTTGAGGGTTTAGATGT
AGATGCTCTGGTCATCGAGCACATCCCGGTGAACAGAGCCCCCAGATGAGCCGCTAAATT
TACAGAGCTCATGGTCGGATTTTCCCCACACTGAGATGATCCTTCCCGAACAGAGCAGAC
TGTTCCCAGCCCAGAAGAGGAGGTGGTACAGATGAGAAAGATAGCCCACAAGAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TRETAQAIKGMHIRKATKYLKD-VTLQ-KQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPK-M
T..TA..IKGM.I.KATKYLK..VT...KQC.PF...N.G.GRCAQ....GWT...WP.KSAEFLLH.LKNA.SNAEL.GLDVD.LVIEHI.VN.AP..M
Retrocopy
TLKTAPVIKGMYIPKATKYLKE/VTFR/KQCRPFHHRNSGAGRCAQGQTVGWTKDQWPQKSAEFLLHRLKNAASNAELEGLDVDALVIEHIPVNRAPR/M


Parental protein
RRRTYRAHGRI-NPYMSSPCHIEMILTEKEQIVPKPEEEVAQKK
.R..YRAHGRI..P....P...E......E..V.......A.KK
Retrocopy
SR*IYRAHGRI\SPH*DDPSRTEQTVPSPEEEVVQ-MRKIAHKK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide