RetrogeneDB ID:
retro_mputfur_1009
Organism:
Location:
GL896992.1:6577582-6578043 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
89.03 %
Coverage:
59.46 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
CMSS1
Parental gene aliases:
No gene alias available
Parental gene description:
cms1 ribosomal small subunit homolog (yeast) [Source:HGNC Symbol;Acc:28666]

Genomic region (view in browser)





>retro_mputfur_1009
GTTCTTTCAAAATCAGAACCCAAACCAGGGACCCCTGAAGACCTACAGAAACTGATGAAG
GACTATTACAGTAGCAATTGTTCAGAGATTGAATTAGAAGATCTAAACCTACAAAACTCC
TGTTTCCTCAAGGCCAATGATTTGACTCATAGTCTCTCATAATACCTAAAAGAAATCTGT
CCTAAGTGGGTAAAACTTCGGAAAAACCATAATGAGAAGAAATCAGTCCTGGTGTTGATC
TCTGCAGCTCTGCTGTCTGGGCCTTGGTGCTCATTAGGTCAATGACAGCATTTAGAGAAG
ACAGCAAAGTTATGAAATTATTTGCAAAACATATTAAGGTCCAAGAGCAGGTAAAGTTGC
TGGAAAAGCATGTGGTGCACCTGGGTGTAGGAACACCGGGGAGAATTAAAGAACTCATTA
TACTAGGAGGCCTTAATTTGAACCCCTTAAAGTTTCTAGTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VLAKSEPKPGTPEDLQKLMKDYYSSNRSVIELEELNLPDSCFLKANDLTHSLSSYLKEICPKWVKLRKNHNEKKSVLMLI-ICSSAVRALELIRSMTAFR
VL.KSEPKPGTPEDLQKLMKDYYSSN.S.IELE.LNL..SCFLKANDLTHSLS.YLKEICPKWVKLRKNHNEKKSVL.LI..CSSAV.AL.LIRSMTAFR
Retrocopy
VLSKSEPKPGTPEDLQKLMKDYYSSNCSEIELEDLNLQNSCFLKANDLTHSLS*YLKEICPKWVKLRKNHNEKKSVLVLI/LCSSAVWALVLIRSMTAFR


Parental protein
GDSKVMKLFAKHIKVQEQVKLLEKRVVHLGVGTPGRIKELVKQGGLNLNPLKFLV
.DSKVMKLFAKHIKVQEQVKLLEK.VVHLGVGTPGRIKEL...GGLNLNPLKFLV
Retrocopy
EDSKVMKLFAKHIKVQEQVKLLEKHVVHLGVGTPGRIKELIILGGLNLNPLKFLV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide