RetrogeneDB ID:
retro_mputfur_1010
Organism:
Location:
GL896993.1:3841557-3842756 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
91.87 %
Coverage:
99.75 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
COPS4
Parental gene aliases:
No gene alias available
Parental gene description:
COP9 signalosome subunit 4 [Source:HGNC Symbol;Acc:16702]

Genomic region (view in browser)





>retro_mputfur_1010
GCAGCAGCCGTGCGGCAGGACTTAGCCCAGCTCCTGAACTCGAGCGGCTCTCACAAAGAT
CCGGTGGGCAAGTACTGTCAGATCCCGGAAAAAGCCGTTCCGTTATCTGGGGCAGAACAA
CTAGAAGCTTTGAAAGCTTTTGTGGAAGCAATGGTAAGTGAGAATGTCAGTCTCGTGATC
TCTCGACAGTTGCTAACTGATTTCTGTACACATCTCCCTAACCTGCCTGACAGCACAGCC
AAAGAAATCTATCTTTTCACCTTGGAAAAGATCCAGCCGAGAGTCATTTCATTTGAGGAG
CAGGTTGCGTCAATAAGACAGCATCGTGCATCCATATATGAGAAAGAAGAAGCTTGGAGA
AATGCAGCCCAAGTGTTGGTGGGAATTCCCTTGGAAACAGGACAAAAGCAGTACAATGTA
GATTATAAACTGGAGACTCACCTGAAGATTGCGAGGCTATAGCTGGAAGATGACGATCCC
GTCCAGGCAGAGGCTTACATAAATCGAGCATCATTGCTTCAGAATGAATCCACCAATGGG
CAGTTACAGATACACTATAAGGTATGCTATGCACCTGTTCTCAATCAGAGAAGAAAATTC
ATTGAAGCTGCACAAGGTACAATGAGCTCTCTTACAAGACAATAAGTCTTACAAGACTAG
AGGCCTTGAAACATGCTTTGTACTGTACCATCTTGGCATCAGCAGGACAGCAGCGGATGC
TAGCCACTCTTTTTAAGGATGAAAGGTGCCAGCAACTTGCTGCTTATGGGATCCTAGAGA
AAATGTACCTAGACAGGATCATCAGAGGAAATCAACTTCAAGAGTTTGCGGCCATGCTAA
TGTCTCACCAAAAAGCAACTACCACTGATGGTTCTAGCATCTTGGACAGAGCTGTTATTG
AACATAATTTGTTGTCTGCAAACAAATTATATAATATCACCTTTGAAGAACTTGGAGCTC
TTTTAGAGATCCCTGCAGCTAAGGCAGAAAAAATAGCATCACAAATGATAACAGAAGGAC
GTATGAATGGATTTATTGATCAGATTGATGGAATAGTTCATTTTGAAACATGGGAAGCCC
TGCCAATGTGGGACAAACAGATCCAGTCCCTTTGTTTCCAAGTGAATAACCTGCTGGAGA
AGATCAGTCAAACGGCGCCAGAGTGGACAGCACAGGCCATGGAGGGGCAGATGGCTCAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AAAVRQDLAQLMTSSGSHKDLAGKYRQILEKAVQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEE
AAAVRQDLAQL..SSGSHKD..GKY.QI.EKAV.LSGAEQLEALKAFVEAMV.ENVSLVISRQLLTDFCTHLPNLPDSTAKEIY.FTLEKIQPRVISFEE
Retrocopy
AAAVRQDLAQLLNSSGSHKDPVGKYCQIPEKAVPLSGAEQLEALKAFVEAMVSENVSLVISRQLLTDFCTHLPNLPDSTAKEIYLFTLEKIQPRVISFEE


Parental protein
QVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKF
QVASIRQH.ASIYEKEE.WRNAAQVLVGIPLETGQKQYNVDYKLET.LKIARL.LEDDDPVQAEAYINRASLLQNESTN.QLQIHYKVCYA.VL..RRKF
Retrocopy
QVASIRQHRASIYEKEEAWRNAAQVLVGIPLETGQKQYNVDYKLETHLKIARL*LEDDDPVQAEAYINRASLLQNESTNGQLQIHYKVCYAPVLNQRRKF


Parental protein
IEAAQ-RYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSIL
IEAAQ.RYNELSYKTI.....RLEALKHAL.CTILASAGQQ..RMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLM.HQKATT.DGSSIL
Retrocopy
IEAAQ/RYNELSYKTI--SLTRLEALKHALYCTILASAGQQ--RMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMSHQKATTTDGSSIL


Parental protein
DRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAM
DRAVIEHNLLSA.KLY.NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFET.EALP.WDKQIQSLCFQVNNLLEKISQTAPEWTAQAM
Retrocopy
DRAVIEHNLLSANKLY-NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETWEALPMWDKQIQSLCFQVNNLLEKISQTAPEWTAQAM


Parental protein
EAQMAQ
E.QMAQ
Retrocopy
EGQMAQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide