RetrogeneDB ID:
retro_mputfur_1014
Organism:
Location:
GL896994.1:3250536-3250869 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.35 %
Coverage:
82.48 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL28
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L28 [Source:HGNC Symbol;Acc:10330]

Genomic region (view in browser)





>retro_mputfur_1014
ATGAATATGCAGAACTGCTCCAGCTTCCTGATCAAGAGGAACAAGCAAGACATACAGCAC
AGAATCCAATAACCTGAAGGCTTATAACTTCTGCCACGATGGGTTGATTCGCTGCAAGAC
CATGAGCATGGAGCTGGCAGCCTGTGGCAAATGTGTAGTGGTGGTCATGAATTGGAGATT
TGGCCAGCAAACCCTGCTACCTCCTACCTGTGGACCATCATCAGCAAGAACGCCCAGGCT
ATCCTCAACAGCATCAGGCACATGAACTTCAAGAAGTATAGCCCAGATCTGTGCATGGCT
GCCATTCACAGAGCCAGCTACACAGCCAGAAGC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVVRNCSSFLIKRNKQ-TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQR-KPATSYVRTTINKNARATLSSVRHMIRKNKYRPD
M...NCSSFLIKRNKQ.TYSTE.NNLKA.N.F...GLI..KT...E.AA.GK.VVVVM..R.GQ...PATSY..T.I.KNA.A.L.S.RHM..K.KY.PD
Retrocopy
MNMQNCSSFLIKRNKQ\TYSTESNNLKAYN-FCHDGLIRCKTMSMELAACGKCVVVVMNWRFGQQ/NPATSYLWTIISKNAQAILNSIRHMNFK-KYSPD


Parental protein
LRMAAIRRASAILRS
L.MAAI.RAS...RS
Retrocopy
LCMAAIHRASYTARS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide