RetrogeneDB ID:
retro_mputfur_1015
Organism:
Location:
GL896994.1:7051229-7051660 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
51.02 %
Coverage:
74.09 %
Frameshifts:
4
Stop codons:
3


Parental gene:
Parental gene symbol:
RHOA
Parental gene aliases:
No gene alias available
Parental gene description:
ras homolog family member A [Source:HGNC Symbol;Acc:667]

Genomic region (view in browser)





>retro_mputfur_1015
AAACATGTGAGGTTAGCTTTCTGGGAACACAGCTAGTCAAGAAGGTCATGATGACTTGAA
TTCACTTTTCTACTCAGACACTGATGTTATGTTGATGTATTTCTTCATCAGTTATATTGG
TAGTATAGGAAATCCCCCAGAAAAAATGGAACCTGGAAGTTAAACATTTCTATACCGATG
TGTACATCATGCTGGTTTAAGAACAAAAATTTTCTCTTGGAGGATGAGTACATGAGGTGA
GAACTAGTTAGGATGAAGCAACAGTTGATAAGTCGATAAGTTTCTAGAGACAGGACAAAT
GGGAGTGGCCATTTTGGGTGCATGGAGTGTTCAGCAAAACTCTAGGTAGAGTGGAGGAAT
TTTTTGAAATGGCCACAAGAGTGGTATTGAAATAAATCTATGGGAAGAAAAATGCTTGGT
GCCTTATTTTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KQVELALWD-TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK-WTPEVKHFCPNVPIILV-GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM
K.V.LA.W..TA.QE..D.L..L.Y.DTDV.LM.F.I....S..N.PEK.W..EVKHF...V.I.LV..NK..L..DE..R.EL..MKQ........RD.
Retrocopy
KHVRLAFWE\TASQEGHDDLNSLFYSDTDVMLMYFFISYIGSIGNPPEK\WNLEVKHFYTDVYIMLV\KNKNFLLEDEYMR*ELVRMKQQLISR*VSRDR


Parental protein
ANRIGAFGYMECSAK-TKDGVREVFEMATRAALQARRGKKKSGCLVL
.N..G.FG.MECSAK.T...V.E.FEMATR..L....GKK...CL.L
Retrocopy
TNGSGHFGCMECSAK/TLGRVEEFFEMATRVVLK*IYGKKNAWCLIL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide