RetrogeneDB ID:
retro_mputfur_1019
Organism:
Location:
GL896995.1:2119015-2119341 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.07 %
Coverage:
96.46 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
EIF1
Parental gene aliases:
No gene alias available
Parental gene description:
eukaryotic translation initiation factor 1 [Source:HGNC Symbol;Acc:3249]

Genomic region (view in browser)





>retro_mputfur_1019
CAGAATCTCTACTCTTTTGACCCTTTTGCTGATGCAAGGAAAGGTGATTGTCTGCTTCCT
CCTGCCGCTGAGGATTATATCCATATAAGAATTCAACAGAGAAATGGCAGGAAGACCCTT
ACCATTGTCCAGGGGACTGCTCAGTTATGATAAAAAGAAACCATTAAGGGTGTTTAAGAA
CAAATTTGCCTGAAGTGACACTGTAATTGAGCCTCCAGAATATGGAGAAGTAATTCTGCT
ACAGGATGACCCGCGCAAAAACATATGCCCGTTCATCATAAGAGACTGGACTGGCTAAGG
ACGACCAGCTGAAACCTCATGGGTTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTV-QGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLV-EIGL
QNL.SFDPFADA.KGD.LLP...EDYIHIRIQQRNGRKTLT.V..G....YDKKK....FK.KFA...TVIE.PEYGEVI.LQ.D.RKNIC.F...E.GL
Retrocopy
QNLYSFDPFADARKGDCLLPPAAEDYIHIRIQQRNGRKTLTIV\RGLLS-YDKKKPLRVFKNKFA*SDTVIEPPEYGEVILLQDDPRKNICPFII\ETGL


Parental protein
AKDDQLKVHGF
AKDDQLK.HGF
Retrocopy
AKDDQLKPHGF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide