RetrogeneDB ID:
retro_mputfur_1025
Organism:
Location:
GL896997.1:5206740-5208040 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
95.62 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
PSMC2
Parental gene aliases:
No gene alias available
Parental gene description:
proteasome (prosome, macropain) 26S subunit, ATPase, 2 [Source:HGNC Symbol;Acc:9548]

Genomic region (view in browser)





>retro_mputfur_1025
ATGCCAGATTACCTCGGTGCCGATCAGCGGAAAACCAAAGAGGAGGAGAAGGACGACAAG
CCTATCCGAGCTCTGGATGAGGGGGATATTGCCTTGCTGAAAACTTACGGTCAAAGCACT
TACTCTAGGCAGATAAAGCAGGTTGAAGATGACATTCAACAGCTTCTCAAGAAAATTAAT
GAGCTCACTGGTATTAAAGAGTCTGATACTGGCCTGGCCCCACCAGCACTCTGGGATTTG
GCTTCAGATAAGCAAACACTGCAGAGTGAACAGCCTTTGCAGGTTGCAAGGTGTACGAAG
ATAATCAATGCTGACTCGGAGGACCCAAAGTACATTATCAATGTGAAGCAGTTTGCCAAG
TTTGTGGTGGACCTCAGTGATCAGGTAGCACCGACCGACATTGAAGAAGGGATGAGAGTT
GGGGTGGACAGAAATAAGTATCAGATTCACATTCCGCTGCCTCCCAAGATTGACCCAACA
GTCACCATAATGCAGGTGGAAGAAAAACCTGATGTCACTTACAGTGATGTGGGTGGCTGT
AAGGAACAGATTGAGAAACTTCGAGAAGTAGTTGAAACCCCATTACTTCATCCAGAAAGA
TTTGTTAACCTTGGCATTGAGCTTCCCAAGGGTGTGCTGCTCTTTGGTCCACCTGGTACA
GGCAAGACCCTCTGTGCTTGGGCAGTTGCTAACAGGATTGATGCTTGCTTCAATCGAGTT
ATTGGATCTGAACTTGTACAGAAGTACGTCGGTGAGGGGACTCGAATGGTTTGTGAGCTC
TTTGAAATGGCCAGAACAAAAAAAGCCTGCCTCATCTTCTTTGATGAAATTGATGCTATT
GGAGGGGCTCGTTTTGATGATGGTGCTGGAGGAGACAACGAAGTGCAGAGAACAATGCTG
GAACTGATCAATCAGCTGGACGGTTTTGATCCTCGAGGTAACATTAAAGTGATGATGGCC
ACTAACAGACCAGACACCCTGGATCCAGCACTCATGAGGCCAGGGAGATTGGACAGAAAG
ATTGAATTCAGCTTACCTGATCTAGAGGGTCGGACTCACATTTTTAAGATTCATGCTCAT
TCAATGAGTGTCAAAAGAGGTATCAGATTTGAATTGTTAGTGCGACTGTGTCCAAATAGC
ACTAGTGCGAAGATTAGAAGCGTCTGCACAGAAGCCGGAATGTTTGCCATCAGAGCATGG
TGAAAAATTGCTACCGAGAAGGATTTCTTGGAGGCTGTAAATAAGGTCAATTAAGTCTTA
CGCCAAATTCACTGCTACTCCCCGCTATATGACATACAAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MPDYLGADQRKTKEEEKDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTK
MPDYLGADQRKTKEEEKDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLA.DKQTLQSEQPLQVARCTK
Retrocopy
MPDYLGADQRKTKEEEKDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLASDKQTLQSEQPLQVARCTK


Parental protein
IINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPER
IINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVT.MQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPER
Retrocopy
IINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTIMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPER


Parental protein
FVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTML
FVNLGIE.PKGVLLFGPPGTGKTLCA.AVANR.DACF.RVIGSELVQKYVGEG.RMV.ELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTML
Retrocopy
FVNLGIELPKGVLLFGPPGTGKTLCAWAVANRIDACFNRVIGSELVQKYVGEGTRMVCELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTML


Parental protein
ELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR
ELINQLDGFDPRGNIKV.MATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHA.SMSV.R.IRFELL.RLCPNST.A.IRSVCTEAGMFAIRA.
Retrocopy
ELINQLDGFDPRGNIKVMMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHAHSMSVKRGIRFELLVRLCPNSTSAKIRSVCTEAGMFAIRAW


Parental protein
RKIATEKDFLEAVNKV-IKSYAKFSATPRYMTYN
.KIATEKDFLEAVNKV.IKSYAKF.ATPRYMTYN
Retrocopy
*KIATEKDFLEAVNKV\IKSYAKFTATPRYMTYN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide