RetrogeneDB ID:
retro_mputfur_1027
Organism:
Location:
GL896997.1:1654125-1655099 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.95 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1027
ATGCTGAAGGTCAGAGTAAATGGATTTGACCATATTTGGCACCTGGTCACTAGGGCCACT
TTTAAATCCAACAAAGGGGATATTGTTGCCATCATGATCCCTTCATTGGCCTTAACTACA
TGGTCCACATGTCCTGGTATGATTCCACCCACCACAAATTCCACAGCACAGTCAAGGTTA
AGAATGGGAAACTTGTCACCAACGGAAAGCCCATCTCCATCTTCCAGGAGTGAGATCTTG
CCAACATCCTGTAGTGTGATGCTGGTGCTGAGTATGTTGTGGAGTCCACTGAGGTCTTCA
CCAACATGGAGAAGGCTGGGGTTCACTTTAAGGGTGGGGTCAAGAGGGTCATCATCTTTG
CCCCTTCTGCTGATGTCTCCATGTTTGTGGTGGGCGTGAACCATGAGAAGTATGACAACT
CCATTAAGATTGTCAGCAATGCCTCCTGCACCACCAACTGCTTGGCCCCTCTGGCCAAGG
TCATCCATGACAACTCCAGCATTGTGAAGGGACTCATGACTGTAGTCCATGCCATCACTA
CTGCTCAGAAGACCATGGATGGCCCCTTGGGGAAGCTGTGGCATGATGACTGAGGGGCTG
CTCAGAATATCATCCCTGCTTCTACTGGTTCTACCAAGGATGTAGATAAGGTTATCCCTG
AGCTGAATGGGAAGTTCACTGGCATGGCTTTCCATGTCCCCACCCCCAGTATGTCAACCA
TGGATCCGACCTGCTGTCTGGAAAAAGCTTCCAAATATGATGGCATCAAGAATTTGGTGA
AGCAGGTATTGGAGTATCCCCTTAAGGGCATCCTGAGGTACACTGAGGATTAAGTAGTCT
CCTGTGACACCCACTCTCCCACCGTCAGTGCTGGGGCTGGCATTGCTCTCAGTGACCACT
TTGTCAAACTCATTTCCTGGTATGACGATGAATCTGGGTACAGCAACCTTATGCTCCATA
TGGCCTTTAAGAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAI-NDPFIDLNYMVYMFQYDSTHGKFNGTVKAENGKLVINGKSISIFQERDPANIKWGDAGAEYVVESTGV
M.KV.VNGF..I..LVTRA.F.S.K.DIVAI..DPFI.LNYMV.M..YDSTH.KF..TVK..NGKLV.NGK.ISIFQE.D.ANI...DAGAEYVVEST.V
Retrocopy
MLKVRVNGFDHIWHLVTRATFKSNKGDIVAI/HDPFIGLNYMVHMSWYDSTHHKFHSTVKVKNGKLVTNGKPISIFQE*DLANIL*CDAGAEYVVESTEV


Parental protein
FTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRG
FT.MEKAG.H.KGG.KRVII.APSAD..MFV.GVNHEKYDNS.KIVSNASCTTNCLAPLAKVIHDN..IV.GLMT.VHAIT..QKT.DGP.GKLW.D..G
Retrocopy
FTNMEKAGVHFKGGVKRVIIFAPSADVSMFVVGVNHEKYDNSIKIVSNASCTTNCLAPLAKVIHDNSSIVKGLMTVVHAITTAQKTMDGPLGKLWHDD*G


Parental protein
AAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGI
AAQNIIPASTG..K.V.KVIPELNGK.TGMAF.VPTP..S..D.TC.LEKA.KYD.IK..VKQ..E.PLKGIL.YTED.VVSCD....THS.T..AGAGI
Retrocopy
AAQNIIPASTGSTKDVDKVIPELNGKFTGMAFHVPTPSMSTMDPTCCLEKASKYDGIKNLVKQVLEYPLKGILRYTED*VVSCD----THSPTVSAGAGI


Parental protein
ALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE
AL.DHFVKLISWYD.E.GYSN....LM.HMA.K.
Retrocopy
ALSDHFVKLISWYDDESGYSN----LMLHMAFKK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide