RetrogeneDB ID:
retro_mputfur_1031
Organism:
Location:
GL896998.1:2495959-2496581 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
88.1 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
4


Parental gene:
Parental gene symbol:
RPL7
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L7 [Source:HGNC Symbol;Acc:10363]

Genomic region (view in browser)





>retro_mputfur_1031
ATGCTTCGAAAGGCAAGGAGGAAGCTTATCTATGAAAAAGCTAAGCATTACCACAAGGAA
TATAGACAGATGTACAGAACTGAGATTTGAATGGCGAGGATGGCAAGAAAGCTGGCAACT
TCTATGTACCCGTGGAACCCACATTGTCATTTGTCATCAGGATCAGAAGGATCAATGGTG
TGAGCCCAAAGGTTTGAAAGGCGTTGCAGCTTCTTCGCCTTCGTCAAATCTTCAATGGCA
CCTTTGTTAAGCTCAACAAGGCTTCAGGTAACATGTTAAGGATTGTGGAACCACATATAG
CATGGGGGTACCCAAACATGAAGTTGGTGAATGAATTGATCTACAAGCATGGTTGTGGCA
AAATCAACAAGAAGTGAATTGCCCTGACAGATAACACACTGATTGCCCAATCTCTTGGTA
GATATGGCATCATCTGCATGGAGGATCTGATTCACGAGGTCTATACAGCTGGAAAACGTT
TCAAAGAGGCAAATAACTTTTTATGGCCCTTCAAATTATCTTCTCTATGAGGGGAATGAA
GAAAAAGACCACCCATTTTGTGGAAGGTAGAGATGCTAGCAACAGGGAAGACCAGATCAA
CAGGCTTATTCAAAGAATGAAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARK-AGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPY
MLRKARRKLIYEKAKHYHKEYRQMYRTEI.MARMARK.AGNFYVP.EP.L.FVIRIR.INGVSPKV.K.LQLLRLRQIFNGTFVKLNKAS.NMLRIVEP.
Retrocopy
MLRKARRKLIYEKAKHYHKEYRQMYRTEI*MARMARK/AGNFYVPVEPTLSFVIRIRRINGVSPKV*KALQLLRLRQIFNGTFVKLNKASGNMLRIVEPH


Parental protein
IAWGYPNLKSVNELIYKRGYGKINKKRIALTDNTLIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRG-GMKKKTTHFVEGGDAGNRED
IAWGYPN.K.VNELIYK.G.GKINKK.IALTDNTLIA.SLG.YGIICMEDLIHE.YT.GKRFKEANNFLWPFKLSS..G.GMKKKTTHFVEG.DA.NRED
Retrocopy
IAWGYPNMKLVNELIYKHGCGKINKK*IALTDNTLIAQSLGRYGIICMEDLIHEVYTAGKRFKEANNFLWPFKLSSL*G/GMKKKTTHFVEGRDASNRED


Parental protein
QINRLIRRMN
QINRLI.RMN
Retrocopy
QINRLIQRMN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide