RetrogeneDB ID:
retro_mputfur_1032
Organism:
Location:
GL896998.1:3603772-3604563 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
93.58 %
Coverage:
92.96 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
PRDX3
Parental gene aliases:
No gene alias available
Parental gene description:
peroxiredoxin 3 [Source:HGNC Symbol;Acc:9354]

Genomic region (view in browser)





>retro_mputfur_1032
CGAATCTGGCGCGCACTGAAGATGGCGGCCGCATTGGGAAGATTTCTCGGGGCTTCGATT
GCCCGACATATGAGTGCTGTTCCTTGGGGCATCTCTGCCTCTGCAGCCTCAGACCTGCTG
CTTCCCGAAGAACATGCCTGACGAATGTATTGTGGTCTGGTTCTGGTCAAGCAAAATTCG
CTTTTAGCACCAGTTCCTCATACCACGCTCCTGCCGCCACCCAGCACGCACCCTATTTTA
AGAGCACTGCCCTTGTCCATGGAGAGTTCAAAGACCTAACCCTCGATGACTTTAAGGGAA
AATATTTGGTGCTTTTCTTCTATCCTTTGGACTTCACCTTTGTGTGTCCTACAGAAATTG
TTGCTTTTAGCGACAAAGCCAATGAATTTCACGACGTGAACTGTGAAGTTGTTGCAGTTT
CAGTGGATTCCCACTTTACCCATCTCGCCTGGGTCAACACAACAAGGAAGAATGGCGGCT
TGGGCCACATGAACATCGCACTCTTGTCAGATCTGAATAAACAGATTTCCTGAGACTATG
GCATGCTGTTGGAAGGCTCCGGAATTGCTCTGAGAGGCCTCTTCATCATTGACCCCAATG
GCATCATCAAGCATTTGAGTGTCAACGATCTCCCCGTGGGCCGAAGTGTGGAAGAGACCC
TCCTCCTGGTGAAGGCATTCCAGTTTGTGGAAAGCCATGGAGAAGTCTGCCCAGCGAACT
GGACCCCGGATTCTCCTATGATCAAGCCACATCCAACTGCTTCCAAAGAATACTTTGAGA
AGGTGAATCAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RISRALKMAAALGRFLRASIARHMSAVPWGIFASAA-LRPAASQRTCLTNVLWSGSGQAKFAFSTSSSYHVPAVTQHAPYFKGTAVVNGEFKDLTLDDFK
RI.RALKMAAALGRFL.ASIARHMSAVPWGI.ASAA.LRPAAS.RTCLTNVLWSGSGQAKFAFSTSSSYH.PA.TQHAPYFK.TA.V.GEFKDLTLDDFK
Retrocopy
RIWRALKMAAALGRFLGASIARHMSAVPWGISASAA/LRPAASRRTCLTNVLWSGSGQAKFAFSTSSSYHAPAATQHAPYFKSTALVHGEFKDLTLDDFK


Parental protein
GKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFTHLAWVNTPRKNGGLGHMNIALLSDLNKQISRDYGVLLEGPGIALRGLFIIDP
GKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFTHLAWVNT.RKNGGLGHMNIALLSDLNKQIS.DYG.LLEG.GIALRGLFIIDP
Retrocopy
GKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFTHLAWVNTTRKNGGLGHMNIALLSDLNKQIS*DYGMLLEGSGIALRGLFIIDP


Parental protein
NGIIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPTASKEYFEKVNQ
NGIIKHLSVNDLPVGRSVEETL.LVKAFQFVE.HGEVCPANWTPDSP.IKPHPTASKEYFEKVNQ
Retrocopy
NGIIKHLSVNDLPVGRSVEETLLLVKAFQFVESHGEVCPANWTPDSPMIKPHPTASKEYFEKVNQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide